Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03665 ATGATAAGAGGAGGAAATTATGGTGTCAATAACGTTAAAATCTTTGGCAATGAAAATATAAATTACATTGACCCTTTCATGGATAGATTCTCATGGGGTCATGATCAAATGACTCACTACCCTAACTATCAACAAAATAGTTCTAGTGTTTTTCCTTACTCTTATGGTTCAAACTATGAGTTTATGTGGCCAAATGCTCAAGAATCAATTGATGGGGTTAATTTAGCAAATGAAGAGGCTTTGGAGTGGACAAACTTCAACCAAAACCCTACATTGTGCCTTAAGGATATTCACGGTTATGGTGAAAACACCGAAATTTTGCGAAAGAAGGGTACGAAAGATACTTCTATGGTTTTGATCAAAGGACAATGGACAAATGAAGAAGACAGGAAATTGATAAGGTTGGTGAAGCAATATGGTGAAAGAAAATGGGCTAAAATAGCTGAGAAGTTAGAAGGAAGGGTTGGCAAGCAGTGTAGAGAGCGATGGCATAATCATTTGCGTCCTGATATTAAGAAGGATAATTGGAGCGAAGAAGAAGAGAAAATATTAGTAGCTACACATGCAAAAATTGGAAACCGTTGGGCTGAGATCGCAAAGAAAATTCCTGGAAGAACAGAAAATGCCATAAAAAATCATTGGAATGCTACAAAAAGAAGACAAAACTCAAGAAGAAAGAACAAGAAGAATGAAACTTCTAAGGGATCAAAACCAAAATCTTCTATACTTGAAGACTATATCAAAAAAACCAACACATCCATCACTACCAAAATTACCAACATACCCTCTTCATCTCATTCAACACACTCTCAAAACCTTGAAGAAAATCAATCAAACCTTTTGTTCAATGAATTACCCTCTGATTCTTTTTCCAATGAATATTTGAATTATTTTCAAGGTAGTATTACTGATGGTGTGAATGAAAGTGGGCTTGTTAATTCAATCCATCAATACCCAAATTTTAACATGCACTTGGATGAGACCACTCCTATAAATAATTTCCTTTCTTATGATCTTTACCTCTCTCAATTTTTGAACTTATAG 1044 0.3477 MIRGGNYGVNNVKIFGNENINYIDPFMDRFSWGHDQMTHYPNYQQNSSSVFPYSYGSNYEFMWPNAQESIDGVNLANEEALEWTNFNQNPTLCLKDIHGYGENTEILRKKGTKDTSMVLIKGQWTNEEDRKLIRLVKQYGERKWAKIAEKLEGRVGKQCRERWHNHLRPDIKKDNWSEEEEKILVATHAKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKNETSKGSKPKSSILEDYIKKTNTSITTKITNIPSSSHSTHSQNLEENQSNLLFNELPSDSFSNEYLNYFQGSITDGVNESGLVNSIHQYPNFNMHLDETTPINNFLSYDLYLSQFLNL 347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03665 347 ProSiteProfiles Myb-like domain profile. 121 167 IPR001005 -
Trre9g03665 347 PANTHER MYB PROTEIN-RELATED 105 240 - -
Trre9g03665 347 SMART sant 172 220 IPR001005 -
Trre9g03665 347 SMART sant 120 169 IPR001005 -
Trre9g03665 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 116 171 IPR017930 -
Trre9g03665 347 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 172 222 IPR017930 -
Trre9g03665 347 CDD SANT 175 218 IPR001005 -
Trre9g03665 347 Pfam Myb-like DNA-binding domain 124 182 - -
Trre9g03665 347 FunFam Transcriptional activator Myb isoform A 120 173 - -
Trre9g03665 347 SUPERFAMILY Homeodomain-like 120 214 IPR009057 -
Trre9g03665 347 Gene3D - 175 249 - -
Trre9g03665 347 Gene3D - 120 172 - -
Trre9g03665 347 CDD SANT 124 167 IPR001005 -
Trre9g03665 347 MobiDBLite consensus disorder prediction 217 232 - -
Trre9g03665 347 ProSiteProfiles Myb-like domain profile. 168 218 IPR001005 -
Trre9g03665 347 MobiDBLite consensus disorder prediction 206 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03665 Trre-Chr9 45100634 45103273 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03665 113 346 MYB Transcription Factor Family AT5G58850 47.273 7.13e-68 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Trre9g03665 Myb_DNA-bind_6 3.9e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03665 K09422 - aprc:113874412 308.145