Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03639 ATGGGTTCTTTATGTGATTTTTGCGGAGGCCAGAGGTCCGTGGTGTATTGTCGCTCTGATGCTGCTTCCTTATGTTTGTCATGTGATCGAAATGTTCATTCTGCTAACACACTTTCTAAGCGTCATTCAAGAACACTTGTATGTGAGAGGTGTAATTCACAACCTGCATATGTGAGGTGTGTTGAAGAGAAAATTTCACTTTGTCAGAATTGTGATTGGTCGGCTCATGGTACCGATCCATCATCTTCAACTCACAAGAGACAATCAATCAATTGCTACTCTGGCTGTCCTTCAGCTTCCGAGCTTTCTTCAATATGGCCCTTTTTCTCAGACATCCCTTCTATGGGTGAAGCATGTGAGCAGGAACTCGGTTTGATGAGCATTAATGAGAACAGCGACAATAAACCTCTTCTTCTTCTTCCAGAAAGCAAGAACGTGTCTGGTTCTACTCAATTCGCCGATCTTCCTAGCAACGATAAACCAAGGCCCGGCACATCTTCAATACCCGAGTCAAGTACAAAACCTCATATTATTGACCAGGCGCCTGAACCTTTCAATGAATGTATGCCTAAGTTACAGTGTTCCAGTAGAAAGGCTCCTGCACTTTGCGAAGATGATAATTTGTTTGATAATTTCAACATAGACGATATGGATCTTGAACTTGAGAACTATAAGGAAATTTTTGCTTTTGCTCTTAATCACTCAGAAGAATATTTTGAAAACGGTAGTATTGATAGCTTATTTGAGAGAAAAGACATGTCTGTAACTGCCGAGGGGCCATCAGCTCGGTTTCCCAGTTCAATCCAACCAGCATACAGCAATGCAGCATCTGCAGATTCAATATTAAGTACTAAAACTGAACCGGTTCTTTACTATACGGAAAGCCAATCCCAATCAAACATTTCATTTTCCAGCGCTACAAAAGATGCTAGTGCTGGTGACAATCTTGAGTGTGGTGCTTCCTCAATGCTTCTCATGGGGGAGCCTCCCTGGTGTCCTCCTTGCCCTGTGACTTCTATTCAATCTACTAATCGCAGCAACGCTGTCATGCGTTATAAGGAAAAGAAAAAGAATCGGAAGTTTGATAAGAAAGTAAGATATGCTTCTCGGAAGGCTAGGGCTGATGTGAGAAAACGTGTGAAAGGCCGGTTCGTCAAAGCTGGGGAAACATTCGACTATGACCCTTTGAGCGAAACCAGAAGCTGCTGA 1209 0.4268 MGSLCDFCGGQRSVVYCRSDAASLCLSCDRNVHSANTLSKRHSRTLVCERCNSQPAYVRCVEEKISLCQNCDWSAHGTDPSSSTHKRQSINCYSGCPSASELSSIWPFFSDIPSMGEACEQELGLMSINENSDNKPLLLLPESKNVSGSTQFADLPSNDKPRPGTSSIPESSTKPHIIDQAPEPFNECMPKLQCSSRKAPALCEDDNLFDNFNIDDMDLELENYKEIFAFALNHSEEYFENGSIDSLFERKDMSVTAEGPSARFPSSIQPAYSNAASADSILSTKTEPVLYYTESQSQSNISFSSATKDASAGDNLECGASSMLLMGEPPWCPPCPVTSIQSTNRSNAVMRYKEKKKNRKFDKKVRYASRKARADVRKRVKGRFVKAGETFDYDPLSETRSC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03639 402 ProSiteProfiles Zinc finger B-box type profile. 43 90 IPR000315 GO:0008270
Trre9g03639 402 MobiDBLite consensus disorder prediction 147 174 - -
Trre9g03639 402 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 1 390 - -
Trre9g03639 402 ProSiteProfiles CCT domain profile. 345 387 IPR010402 GO:0005515
Trre9g03639 402 MobiDBLite consensus disorder prediction 147 181 - -
Trre9g03639 402 CDD Bbox1_BBX-like 47 90 - -
Trre9g03639 402 CDD Bbox1_BBX-like 4 47 - -
Trre9g03639 402 Pfam CCT motif 345 387 IPR010402 GO:0005515
Trre9g03639 402 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Trre9g03639 402 SMART bboxneu5 48 90 IPR000315 GO:0008270
Trre9g03639 402 SMART bboxneu5 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03639 Trre-Chr9 44914201 44917880 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03639 1 401 C2C2-CO-like Transcription Factor Family AT3G07650 53.110 4.88e-139 400
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Trre9g03639 CCT 4.8e-17 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03639 - - tpra:123922680 702.59