Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03634 ATGGTGGAACCAGAACAAGAACAAGAACAAGAACAGGAACAACAAGAATCAGAACCAGAAACAAAGGAAACATCAACAACAACAACAATGTTGAAACACAATCAGACAATGCAGTTATTATCAGAAAAACTAACAAATGGAAACCTTAACTCAAAGATTGAAGCTGCAAGAGAAATCAGAAGAATGATTCGAAAATCATCAAAAACACGCTCTAAATTAGCTGATACTGGTGTCATTCAACCTCTTATCTTCATGCTTTCTTCTTCTAACTTTGATGCTCGTCATTCCTCTCTTCTTGCTCTCCTCAATCTTGCTGTTCGTAATGAAAGAAACAAGGTCCAAATAGTGACAGCTGGTGCAGTGCCTCCTCTGGTGGAGCTTCTCAAGATACAAAGTAATGGTATACGAGAATTAGCTACAGCCGCAGTCTTGACACTCTCATCTGCTGCAACCAACCAGCCGATTATTGCTTCTTCTGGAGCTGCTCCTCTCCTTGTTCAGATTCTGAAATCTGGAAGTGTTCAAGGCAAAGTTGATGCTGTTACAACCCTCCATAATCTCTCCTCTGGCATTGAGAACTCCATTGAACTTCTTGATGCTAGTGCTGTTTCTCCTCTTATCAACCTCCTTAAAGACTGTAAGAAGTATTCAAAGTTTGCAGAAAAAGCTACATCACTACTCGAAATCCTTTCCAACTCTGAAGAGGGACGCATCGCAATCTCGCTAGCAGACGGTGGAATTTTGACTCTAGTAGAGACAGTTGAAGACGGATCACTTGTCAGCACAGAGCATGCTGTTGGAGCATTGTTATCATTATGTCTAAGCTGCCGGGATAAATATCGGGAACTAATTCTTAAAGAAGGAGCAATTCCAGGTCTGTTACGGCTAACAGTAGAGGGCACAACCGAAGCTCAAGATAAAGCTCGCACGCTTCTGGATTTGCTCAGAGATTCTCCTCAAGAAAAAAAACTAGACTCCTCAGTTTTGGAAAAAATTGTTTTCGACATCGCTGAACGGCTAGATAGAGTAGATAAAACTGCTGAAACTTCGAAATGA 1056 0.4119 MVEPEQEQEQEQEQQESEPETKETSTTTTMLKHNQTMQLLSEKLTNGNLNSKIEAAREIRRMIRKSSKTRSKLADTGVIQPLIFMLSSSNFDARHSSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKIQSNGIRELATAAVLTLSSAATNQPIIASSGAAPLLVQILKSGSVQGKVDAVTTLHNLSSGIENSIELLDASAVSPLINLLKDCKKYSKFAEKATSLLEILSNSEEGRIAISLADGGILTLVETVEDGSLVSTEHAVGALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTTEAQDKARTLLDLLRDSPQEKKLDSSVLEKIVFDIAERLDRVDKTAETSK 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03634 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 119 161 IPR000225 GO:0005515
Trre9g03634 351 SMART arm_5 107 148 IPR000225 GO:0005515
Trre9g03634 351 SMART arm_5 233 274 IPR000225 GO:0005515
Trre9g03634 351 SMART arm_5 190 232 IPR000225 GO:0005515
Trre9g03634 351 SMART arm_5 149 189 IPR000225 GO:0005515
Trre9g03634 351 SMART arm_5 66 106 IPR000225 GO:0005515
Trre9g03634 351 Pfam Armadillo/beta-catenin-like repeat 108 146 IPR000225 GO:0005515
Trre9g03634 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 77 119 IPR000225 GO:0005515
Trre9g03634 351 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 201 245 IPR000225 GO:0005515
Trre9g03634 351 PANTHER U BOX DOMAIN-CONTAINING 28 318 - -
Trre9g03634 351 Gene3D - 34 158 IPR011989 -
Trre9g03634 351 MobiDBLite consensus disorder prediction 1 29 - -
Trre9g03634 351 SUPERFAMILY ARM repeat 34 321 IPR016024 -
Trre9g03634 351 Gene3D - 159 342 IPR011989 -
Trre9g03634 351 FunFam U-box domain-containing protein 4 12 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03634 Trre-Chr9 44874803 44879449 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03634 40 317 U-box Gene Family AT3G54790 38.710 1.70e-38 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03634 K08332 - gmx:100785760 488.804