Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03625 ATGGGTGCCGTCGGCGAGTGTTTACCTCCGCCGCATGCGGAGGAGATGGCGGTGCTGTCTCTTAATAAGCTTCCGTTAGGTTTTCGGTTTCGTCCTACTGATGAGGAAGTCATCGATTACTATCTTAGACAGAAGATCAATGGAAACGGTGATGAAGTTTGGGTTATTCGTGAAGTTGATGTTTGTAAATGGGAGCCTTGGGATTTACCTGATTTATCGGTGGTAAGAAACAAGGATCCAGAGTGGTTCTTCTTCTGTCCGCAGGATCGGAAGTATCCAAATGGAAGTAGGTTGAACCGAGCAACAACTCATGGGTATTGGAAGGCAACAGGCAAGGATCGGTTGATTAAGTCTGGCTCCACCTTGATTGGAATGAAGAAGACTCTTGTTTTCTATGCCGGTCGTGCTCCGAAAGGGAAGAGGACCAATTGGGTTATGCATGAGTATAGGCCTACCTTGAAGGAGCTCGATGGTACCAACCCTGGACAGAACCCATATGTCATTTGTCGCTTGTTTAAGAAGCTAGATGGGAGTCTCGAAAGTTCAAACTGTGGTGAAGTGGAGCAGACTGCTTCAAATCCTACGTCTGAAGATTACTCTCCAGAAGATATACAGTCGGATCTAAATATGGTTCCTGTATCTTCCTCACCAGCCACAGAAGATGATAGGCATCTAGCTGCTATCCCTGAGATTTCTGAGGAGGCAATATCCAACGTTATAACCCCAGCTGATTGCTATAGCGATGCATGCAATGCTTCTGATGCACAATGTCAAGTTGTTGAAGTACCAGCTGCAGAGGATGATCAACTGTTGAATTTGGACATATTTGATGACCCACAATTTGAGCCATTTGATGATAAATTATTCTCCCCGGTCCACGCACATTTTCCACGAGAGTTTAATTATCAAGCCAACAACGAAATCGATTTTCAGTATGGTACAAATGAAACAGATATTTCAGAGTTTTTCAACTCGGCTGTTAATTGGGACGAGTTCTCCTACGGGCCGTCTAACTCATTCTTCCTTAGTCATGAGGACAACGGTTTGTGCAGTGACTCAGATGCAGAAATGGCCAAAGCGACGATGCATCTGCAAGCTGATTTTGGAAATAGTGATGAAGGATTGTTCCAGAACAACTCCCAGATGTCTTTTTCACCTGATTTCAATATCGGCCAAGCGCCCGCTGTGGTCGATGAATATGAGCAAATAACGACTATGACAGCACGAGGTTACACTGGAATAATGCCAAGCAATCGACAAGGACTGAGTGGACAGCCAAATATGAACCAAGTCTTGCAAGCACGAGGTAGTGCACCGAGAAGAATACGGTCGGGAGGATTTGTTACGCATTCCAATGTTTCCAAGGAAACAACAAAAGATGAGAGTTCTGCACCAGAAAACCCGAACTCAGAAACCATAATTCCAACGGTAGTGGGCAGAAGGGTCCGCAACACATCAAAAAGATCCTCCAATCGTTCCATGTGGTTTTCTGTTCTTGCAGTTTCTGCCACTGTACTGGTCTCAGTTGTATTGCTTGTTAATATTTGGGGATATACTTAG 1560 0.4474 MGAVGECLPPPHAEEMAVLSLNKLPLGFRFRPTDEEVIDYYLRQKINGNGDEVWVIREVDVCKWEPWDLPDLSVVRNKDPEWFFFCPQDRKYPNGSRLNRATTHGYWKATGKDRLIKSGSTLIGMKKTLVFYAGRAPKGKRTNWVMHEYRPTLKELDGTNPGQNPYVICRLFKKLDGSLESSNCGEVEQTASNPTSEDYSPEDIQSDLNMVPVSSSPATEDDRHLAAIPEISEEAISNVITPADCYSDACNASDAQCQVVEVPAAEDDQLLNLDIFDDPQFEPFDDKLFSPVHAHFPREFNYQANNEIDFQYGTNETDISEFFNSAVNWDEFSYGPSNSFFLSHEDNGLCSDSDAEMAKATMHLQADFGNSDEGLFQNNSQMSFSPDFNIGQAPAVVDEYEQITTMTARGYTGIMPSNRQGLSGQPNMNQVLQARGSAPRRIRSGGFVTHSNVSKETTKDESSAPENPNSETIIPTVVGRRVRNTSKRSSNRSMWFSVLAVSATVLVSVVLLVNIWGYT 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03625 519 Pfam No apical meristem (NAM) protein 25 150 IPR003441 GO:0003677|GO:0006355
Trre9g03625 519 MobiDBLite consensus disorder prediction 443 473 - -
Trre9g03625 519 MobiDBLite consensus disorder prediction 183 203 - -
Trre9g03625 519 FunFam Nac domain-containing protein 86 33 177 - -
Trre9g03625 519 SUPERFAMILY NAC domain 16 174 IPR036093 GO:0003677|GO:0006355
Trre9g03625 519 Gene3D NAC domain 33 176 IPR036093 GO:0003677|GO:0006355
Trre9g03625 519 ProSiteProfiles NAC domain profile. 24 174 IPR003441 GO:0003677|GO:0006355
Trre9g03625 519 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 23 244 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03625 Trre-Chr9 44781634 44784837 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03625 16 443 NAC Transcription Factor Family AT4G35580 42.308 2.00e-96 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g03625 NAM 8.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03625 - - psat:127118605 709.523