Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03620 ATGAGTGAGTCAGTGTTACTCTTCAAGGGAGAAGAAGAACGCCACAAACTCGTCACTTTCCCTTCACCATTCAATGGTACCCAACTCTTAAAAAATATCAAAGTTATGAACTTTTCTTGTGTCATAACAAAACCCAATTTTCCATTTTCCCAAACAGAAATGCCAATTCTAACATTTGGTCATTCTAAGTTAAGTGCTACCTTAGCTCTTCAATTACCATGTAGTTGTGTTAGGAAGATAAGGTTGATTACAAAGCTTCAATGTTCTGTTGCTGGTAGGACATATACTACTTCTAGGACAGGTGATTCGCGGGGACCGAAACGGGACTCTGGCGAAATTCAAAGGAGGAAGGGAGGACCCTCGTCGTCTTATGTTGGTTACATTCGTCCTAGTTTATCTGAAATGAAGAAAGATAAGGTGGCGATACGTGAAAATGTTTATGAGTTTTTGCGGGGAATTGGTATTGTTCCTGATGAGCTTGATGGTCTTGAACTTCCTGTTACGGTTGATGTTATGAAGGAGCGGGTTGATTTTCTTCATAGTTTGGGGCTTACAATTGAAGATATTAACAACTATCCTCTTGTTCTTGGTTGTAGCGTTAAGAAGAATATGGTTCCTGTGCTTGATTACCTTGGTAAATTGGGAGTTAGGAAATCCACGTTAACGCAGTTTTTGCAGAGATACCCGCAAGTGCTTCATGCTAGTGTGGTTGTGGATCTTCAACCGGTGGTCAAGTATCTTCAAGGGATGGATATAAAGCTCATTGATATTCCTCGTGTTCTTGAGAGGTATCCTGAACTGTTGGGATTCAAACTTGAGGGTACCATGAGCACATCAGTTGCTTATTTGGTTGGAATCGGTGTTGATAGAAGAGAACTCGGAGGTATCTTAACTAGATACCCGGAGATTTTGGGGATGCGGGTTGGTAGAATCATCAAGCCTTATGTGGAGTATTTAGAAAGCTTGGGTATTCCAAGGCTAGCGGTTGCTAGACTGATAGAGACACGACCTTATATTCTTGGATTCGATCTGGATGAGAAGGTGAAGCCAAATGTCAAATCCCTTGAAGAGTTTAATGTTAGGAAAACATCGCTTGCATCTATAATTGCTCAGTATCCTGACATCATTGGAACTGACCTAGAGCTGAAGCTTACCAATAAGAGAAATGTGCTCAATTCTGTGCTTGATTTGGATCCTGAGGATTTCGGCTTAATTGTTGAGAAGATGCCGCAAGTAGTTAGCCTCAGTAGTACACCTATGCTGAAGCACGTTGATTTTCTTAAGGATTGTGGGTTTTCCGTGGATCAAATGAGGAAGATGATTGTTGGATGCCCTCAGCTACTTGCTTTAAACATTGATATTATGAAACTTAGCTTTGATTACTTCCAAAGTGCGATGGAAAGGTCTTTGGAAGACTTGGTTGAATTCCCAGCATTCTTCACGTATGGTTTGGAGTCAACAATAAAACCAAGGAATAACATGGTTACAAAGAAAGGATTGAAGTGTTCTTTGGCATGGATGCTTAATTGTTCTAATGAGAAATTTGAGCAACGAATGGACTATGATACTATTGACATGGAAGAGATGGAAATGGAACCGTCATTTGACATGAATTCATTGACGCAACCAAGGAATGATGAATCAGATTCTGATTACGAAGACAGTGATGATGAAGATGACGATGAATAA 1689 0.4026 MSESVLLFKGEEERHKLVTFPSPFNGTQLLKNIKVMNFSCVITKPNFPFSQTEMPILTFGHSKLSATLALQLPCSCVRKIRLITKLQCSVAGRTYTTSRTGDSRGPKRDSGEIQRRKGGPSSSYVGYIRPSLSEMKKDKVAIRENVYEFLRGIGIVPDELDGLELPVTVDVMKERVDFLHSLGLTIEDINNYPLVLGCSVKKNMVPVLDYLGKLGVRKSTLTQFLQRYPQVLHASVVVDLQPVVKYLQGMDIKLIDIPRVLERYPELLGFKLEGTMSTSVAYLVGIGVDRRELGGILTRYPEILGMRVGRIIKPYVEYLESLGIPRLAVARLIETRPYILGFDLDEKVKPNVKSLEEFNVRKTSLASIIAQYPDIIGTDLELKLTNKRNVLNSVLDLDPEDFGLIVEKMPQVVSLSSTPMLKHVDFLKDCGFSVDQMRKMIVGCPQLLALNIDIMKLSFDYFQSAMERSLEDLVEFPAFFTYGLESTIKPRNNMVTKKGLKCSLAWMLNCSNEKFEQRMDYDTIDMEEMEMEPSFDMNSLTQPRNDESDSDYEDSDDEDDDE 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03620 562 PANTHER CGI-12 PROTEIN-RELATED 207 325 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 222 253 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 438 469 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 403 433 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 330 361 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 366 398 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 258 289 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 294 325 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 186 217 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 SMART mt_12 470 501 IPR003690 GO:0003690|GO:0006355
Trre9g03620 562 MobiDBLite consensus disorder prediction 532 562 - -
Trre9g03620 562 FunFam Transcription termination factor mterf4, chloroplastic 172 309 - -
Trre9g03620 562 Gene3D Transcription termination factor 3, mitochondrial 309 525 IPR038538 -
Trre9g03620 562 Gene3D Transcription termination factor 3, mitochondrial 132 238 IPR038538 -
Trre9g03620 562 MobiDBLite consensus disorder prediction 95 123 - -
Trre9g03620 562 FunFam Transcription termination factor MTERF4, chloroplastic 310 524 - -
Trre9g03620 562 Pfam mTERF 208 516 IPR003690 GO:0003690|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03620 Trre-Chr9 44758194 44760528 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR mTERF Trre9g03620 mTERF 1.7e-106 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03620 K15032 - gmx:100785223 807.749