Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03593 ATGGAAACTTTGGATGGTAGTAATTCAGACCAATATGCTAATGTTTCTTCTAATTCGCCATCGTTATCGTCATCGTCGTCATCTTCGTCGTTTGGAGGGGTTAATGGTGATGATAATAATGGTAGTGTGACTTGGTATGGAATGAGGTTACCTTCTGTTAATCCCTTTTTGTCACCACTTTCGTTTTTATTGGATTATTCTGGAGTTCTAAGATCAAACAATGATTCTGAGGCTATGATTGTGAACAATGGAGTTTCTGGTTCGGAAATACGGTCTCGTGTTGATTCTGCTGCTGCTGTTGGTGAGAGCAGTGCAGGGGAAGTTGCAATTAGGATTATTGGAGCTGGAGAGCATATTCAGAATCAGGTTGGGGAAGTGGGTTATGATGATTGTGGTGAGGATCTGGTTGGTGAGAGAAGTGGAATTCCTGCATTGGATGATGGTGATGCTGAGGGACGTGGTGGAATTGAGACTAGTGAGGGGGTTCCTCTTGTGTCTTCGTCTTCATCGTCGTCGTTGGCTGGTAGTGGACAGGTTGATGGTGATACTTCTGGGAATGGAACAGAAAATAACAGCAGGGATTCGTCTTCTTATCAGAGATATGATATTCAGCTGGTTGCTAAGTGGATTGAGCAGATTCTTCCTTTTTCGCTCTTGTTATTGGTTGTTTTCATCCGACAGCATTTGCAAGGTTTCTTTGTCACAATTTGGATAGCAGCTGTGATGTTCAAGTCAAATGAAATTGTTAAGAAACAGACAGCTTTGAAGGGAGATAGGAAAGTCTCTTTGCTTGCTGGTATCTCTATTGCTTTCATTCTTCACGTGATATGCATTTACTGGTGGTATCGAAATGATGATATTTTATATCCACTGGTCATGTTACCTCCAAGTCCAACACCTTTCTGGCATGCAATATTCACAATCTTGGTCAATGATATATTGATGCGGCAAGTTGCAATGGCTTTTAAGTGTATCCTACTTATATATTACAAAAAGGGGAAAGGTCATAACTTCCGTCGGCAGGCTCAAATGTTAACTCTTGTTGAGTACACGCTGCTGTTGTATCGTGCCTTGTTGCCAACACCAGTTTGGTACCGGTTTTTCTTGAATAGGGAATACGGCAGTCTCTTTTCGTCACTGACAACAGGATTGTATTTAACTTTCAAACTGACATCCGTTGTTGAGAAGGTCCAGTGCTTCATTTCTGCCTTGAAAGCATTATCAAGAAAGGAAGTTCATTATGGGGTCTATGCCACAGCGGAACAGGTAACAGCTGCTGGTGACCTATGCGCTATATGCCAGGAGAAGATGCATTCCCCCATCTTGCTACGTTGTAAACACATTTTCTGCGAAGATTGTGTATCTGAGTGGTTTGAAAGAGAAAGGACTTGCCCTCTATGCAGAGCATTGGTTAAAGCAGCTGATCTTCGGACCTTCGGAGATGGATCAACAAGTTTGTTTTTCCAGTTGTTTTAA 1476 0.4207 METLDGSNSDQYANVSSNSPSLSSSSSSSSFGGVNGDDNNGSVTWYGMRLPSVNPFLSPLSFLLDYSGVLRSNNDSEAMIVNNGVSGSEIRSRVDSAAAVGESSAGEVAIRIIGAGEHIQNQVGEVGYDDCGEDLVGERSGIPALDDGDAEGRGGIETSEGVPLVSSSSSSSLAGSGQVDGDTSGNGTENNSRDSSSYQRYDIQLVAKWIEQILPFSLLLLVVFIRQHLQGFFVTIWIAAVMFKSNEIVKKQTALKGDRKVSLLAGISIAFILHVICIYWWYRNDDILYPLVMLPPSPTPFWHAIFTILVNDILMRQVAMAFKCILLIYYKKGKGHNFRRQAQMLTLVEYTLLLYRALLPTPVWYRFFLNREYGSLFSSLTTGLYLTFKLTSVVEKVQCFISALKALSRKEVHYGVYATAEQVTAAGDLCAICQEKMHSPILLRCKHIFCEDCVSEWFERERTCPLCRALVKAADLRTFGDGSTSLFFQLF 491
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03593 491 ProSitePatterns Zinc finger RING-type signature. 445 454 IPR017907 -
Trre9g03593 491 SUPERFAMILY RING/U-box 423 472 - -
Trre9g03593 491 SMART ring_2 430 467 IPR001841 -
Trre9g03593 491 MobiDBLite consensus disorder prediction 139 195 - -
Trre9g03593 491 MobiDBLite consensus disorder prediction 161 195 - -
Trre9g03593 491 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 406 478 IPR013083 -
Trre9g03593 491 ProSiteProfiles Zinc finger RING-type profile. 430 468 IPR001841 -
Trre9g03593 491 MobiDBLite consensus disorder prediction 1 34 - -
Trre9g03593 491 Pfam Zinc finger, C3HC4 type (RING finger) 428 472 - -
Trre9g03593 491 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 24 491 IPR044235 GO:0061630|GO:1904294
Trre9g03593 491 CDD RING-HC_RNFT1-like 428 468 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03593 Trre-Chr9 44564908 44571394 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03593 50 491 C3H Transcription Factor Family AT5G01960 62.416 0.0 538
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03593 - K22379 nnu:104612968 584.719