Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03589 ATGCAGCAAATCTTTGTTAAGACCCTCCCTAGCAAGACCATTACTCTCGAAGTTGAGAGTTCAGATACCATAGACAATGTTAAGAGCAAGATTCAAGATAAGGAAGGGATCCCATCAGACCAGCAGCGTCTGATTTTTGCTGGAAAGCAGTTGGAGGATGGGCGTACCCTTGCTGATTACAACATCCAAAAGGAGTACACCCTCCATTTGGTTCTCCGTCTCCGTGGTGGGATGCAAATATTTGTCAAGACTCTCACTGGAAAGACAATCACCCTTGAGGTGGAAAGTTCTGATACCATTGACAATGTCAAGGCTAAGATTCAAGACAAGGAGGGTATTCCCCCGGATCAGCAAAGGTTGATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAGGAATCCACTCTTCATCTTGTCTTGCGACTTCGTGGTGGTATGCAGATTTTTGTGAAGACCCTTACAGGCAAAACAATTACTTTGGAGGTTGAGAGCTCAGACACAATTGACAATGTAAAGACTAAGATTCACGACAAGGAGGGTATTCCCCCAGATCAGCAAAGGTTGATTTTTGCCGGAAAACAGTTGGAAGATGGCCGAACCTTGGCTGATTACAACATCCAGAAGGAATCCACCCTTCATCTTGTCCTTCGTTTGAGGGGAGGCATGCAAATATTTGTGAAGACATTGACTGGTAAAACCATTACTTTGGAGGTGGAGAGCTCAGACACAATTGACAATGTGAAGGCTAAGATACAGGACAAAGAGGGTATCCCTCCAGACCAGCAGAGGCTCATTTTTGCTGGAAAGCAGCTTGAAGATGGCAGAACTCTTGCTGATTATAACATCCAGAAAGAGTCAACTCTTCACCTTGTCTTGCGTCTTCGTGGTGGTATGCAGATTTTCGTGAAGACTCTTACTGGAAAGACTATTACCTTGGAGGTAGAGAGCTCAGACACTATTGACAATGTGAAGACCAAGATACAGGACAAAGAAGGTATCCCCCCAGACCAGCAAAGGTTGATCTTTGCTGGAAAGCAGCTTGAAGATGGCCGGACTTTGGCTGATTATAACATTCAGAAAGAGTCCACCCTTCACCTTGTCCTTCGTCTGAGGGGAGGTATGCAAATCTTTGTGAAGACGCTGACCGGAAAGACCATTACCTTAGAGGTAGAAAGTTCAGACACAATTGATAATGTGAAGGCAAAAATACAGGATAAGGAGGGAATCCCACCAGATCAGCAGAGGTTGATCTTTGCTGGGAAGCAATTGGAGGATGGAAGGACTCTTGCCGACTACAACATTCAGAAGGAGTCTACTCTTCACCTTGTTTTGCGCCTTCGTGGTGGATTTTGA 1377 0.451 MQQIFVKTLPSKTITLEVESSDTIDNVKSKIQDKEGIPSDQQRLIFAGKQLEDGRTLADYNIQKEYTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIHDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKTKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGF 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03589 458 ProSitePatterns Ubiquitin domain signature. 104 129 IPR019954 -
Trre9g03589 458 ProSiteProfiles Ubiquitin domain profile. 78 153 IPR000626 GO:0005515
Trre9g03589 458 ProSiteProfiles Ubiquitin domain profile. 306 381 IPR000626 GO:0005515
Trre9g03589 458 ProSiteProfiles Ubiquitin domain profile. 2 77 IPR000626 GO:0005515
Trre9g03589 458 SMART ubq_7 230 301 IPR000626 GO:0005515
Trre9g03589 458 SMART ubq_7 306 377 IPR000626 GO:0005515
Trre9g03589 458 SMART ubq_7 382 453 IPR000626 GO:0005515
Trre9g03589 458 SMART ubq_7 78 149 IPR000626 GO:0005515
Trre9g03589 458 SMART ubq_7 2 73 IPR000626 GO:0005515
Trre9g03589 458 SMART ubq_7 154 225 IPR000626 GO:0005515
Trre9g03589 458 SUPERFAMILY Ubiquitin-like 305 381 IPR029071 -
Trre9g03589 458 ProSiteProfiles Ubiquitin domain profile. 230 305 IPR000626 GO:0005515
Trre9g03589 458 FunFam Polyubiquitin 3 382 457 - -
Trre9g03589 458 ProSiteProfiles Ubiquitin domain profile. 382 457 IPR000626 GO:0005515
Trre9g03589 458 CDD Ubl_ubiquitin 382 457 - -
Trre9g03589 458 ProSitePatterns Ubiquitin domain signature. 256 281 IPR019954 -
Trre9g03589 458 FunFam Ubiquitin-60S ribosomal protein 2 78 - -
Trre9g03589 458 ProSitePatterns Ubiquitin domain signature. 332 357 IPR019954 -
Trre9g03589 458 SUPERFAMILY Ubiquitin-like 228 305 IPR029071 -
Trre9g03589 458 CDD Ubl_ubiquitin 230 305 - -
Trre9g03589 458 PANTHER UBIQUITIN 78 155 - -
Trre9g03589 458 Gene3D - 382 458 - -
Trre9g03589 458 Gene3D - 79 153 - -
Trre9g03589 458 Gene3D - 306 381 - -
Trre9g03589 458 Gene3D - 154 229 - -
Trre9g03589 458 Gene3D - 1 78 - -
Trre9g03589 458 Gene3D - 230 305 - -
Trre9g03589 458 SUPERFAMILY Ubiquitin-like 77 153 IPR029071 -
Trre9g03589 458 CDD Ubl_ubiquitin 78 153 - -
Trre9g03589 458 SUPERFAMILY Ubiquitin-like 152 229 IPR029071 -
Trre9g03589 458 CDD Ubl_ubiquitin 306 381 - -
Trre9g03589 458 ProSitePatterns Ubiquitin domain signature. 180 205 IPR019954 -
Trre9g03589 458 SUPERFAMILY Ubiquitin-like 381 457 IPR029071 -
Trre9g03589 458 ProSiteProfiles Ubiquitin domain profile. 154 229 IPR000626 GO:0005515
Trre9g03589 458 FunFam Polyubiquitin 3 79 153 - -
Trre9g03589 458 CDD Ubl_ubiquitin 154 229 - -
Trre9g03589 458 FunFam Polyubiquitin 3 230 305 - -
Trre9g03589 458 FunFam Polyubiquitin 3 154 229 - -
Trre9g03589 458 Pfam Ubiquitin family 384 455 IPR000626 GO:0005515
Trre9g03589 458 Pfam Ubiquitin family 232 303 IPR000626 GO:0005515
Trre9g03589 458 Pfam Ubiquitin family 4 75 IPR000626 GO:0005515
Trre9g03589 458 Pfam Ubiquitin family 80 151 IPR000626 GO:0005515
Trre9g03589 458 Pfam Ubiquitin family 308 379 IPR000626 GO:0005515
Trre9g03589 458 Pfam Ubiquitin family 156 227 IPR000626 GO:0005515
Trre9g03589 458 ProSitePatterns Ubiquitin domain signature. 28 53 IPR019954 -
Trre9g03589 458 SUPERFAMILY Ubiquitin-like 1 77 IPR029071 -
Trre9g03589 458 ProSitePatterns Ubiquitin domain signature. 408 433 IPR019954 -
Trre9g03589 458 FunFam Polyubiquitin 3 306 381 - -
Trre9g03589 458 PRINTS Ubiquitin signature 88 108 IPR019956 -
Trre9g03589 458 PRINTS Ubiquitin signature 130 151 IPR019956 -
Trre9g03589 458 PRINTS Ubiquitin signature 109 129 IPR019956 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03589 Trre-Chr9 44546651 44548027 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03589 3 78 Cytoplasmic Ribosomal Protein Gene Family AT3G52590 92.105 1.95e-41 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03589 - K08770 gmx:121173311 865.914