Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03579 ATGAAGTGTTTCCATTTCTCAAACGGAGGATCAGAAAAACAACAACGAGTAATAGGAGAAGACGAAGAAACCACTTCAGCATCAAGCTCAAGAGGTTCACGTGTCTCATGGGCGCGTTCACTAAGCTTAATGGACACGCGCCGTTCCGAATACGATTCCGATTCACGTGACTTCTCCGATACTCTTGGTTTCCATGAGTTTCTCTCTCAACGTCGAGCCAATCACCTTAACATCTTCTCTTTCTCTGATCTTAAAATCGCAACTCGTGGTTTCAATAGAGCTCTTTTAATTGGTGAAGGTGGTTTCGGTTCTGTTTATAGAGGAACCCTAAATCATCATTCTCATCGTTCTCAAATTGATGTTGCGATTAAACAGTTGAATCGTAATGGTCATCAGGGGCATAAGGAGTGGATTAATGAAGTGAATTTGTTAGGGGTAATTAAGCATCCAAATTTGGTGAGGTTAGTGGGTTATTGTGCTGAAGATGATGAAAGAGGGATTCAGAGGCTTTTGGTGTATGAATTTATGTCTAATAAGAGTTTGGAAGATCATCTTTTGGTTCGTGTTCCTTCTTCGGTTCTTCCTTGGATTACTAGATTAAGAATTGCACAAGATGCGGCTCGTGGCTTGGCTTACCTTCATGAAGAAATGGATTTTCAGCTAATATTTCGAGATTTTAAAACATCCAACATCTTACTGGATGAGGACTTCAATGCAAAGCTTTCTGATTTTGGACTCGCTAGGCAAGGACCCTCAGAAGGATTTGGCTATGTTTCAACAGCAGTTGTTGGCACCATAGGATATGCTGCACCAGAGTATGTTCATACCGGTAAGCTGACTGCTAAGAGTGATGTGTGGAGCTTTGGCGTAGTTCTTTATGAGCTTATCACTGGGAGGAGAGCCGTAGAAAGAAACCTACCAAGAAACGAACAAAAGCTTCTGGATTGGGTAAGACCTTATGTATCTGATTCTAAGAAGTTCCATCATATTATCGATCCCCGACTTGAGGGACAGGATTGCACCAAATCAGCTCATAAACTTGCAATCCTAGCAAACAAGTGTCTGATGAAGCAGCCAAAATCTCGTCCAAAAATGAGCGAGGTGGTTGAGATTCTCGACAGCATTATCAACGAGACTGTTCCTGTGGATGAATGCATTTCTGAAGTTGTTACTGAAACAGGAGAAGGAAATGTAGTTAATTTATCTGTAGAGGTCACTGAACCTGAACCAGCTAAACAGGGGAATAATTATCTGAAGAAGGTTTTTGAATTCAGAGACAAGGTGAGCTTAAAAAATAAATCCATTGGAAGGTTTGATTGGAAAAATTGGGCGCCTGGGCTTGTAAGAACTTGGTGA 1356 0.413 MKCFHFSNGGSEKQQRVIGEDEETTSASSSRGSRVSWARSLSLMDTRRSEYDSDSRDFSDTLGFHEFLSQRRANHLNIFSFSDLKIATRGFNRALLIGEGGFGSVYRGTLNHHSHRSQIDVAIKQLNRNGHQGHKEWINEVNLLGVIKHPNLVRLVGYCAEDDERGIQRLLVYEFMSNKSLEDHLLVRVPSSVLPWITRLRIAQDAARGLAYLHEEMDFQLIFRDFKTSNILLDEDFNAKLSDFGLARQGPSEGFGYVSTAVVGTIGYAAPEYVHTGKLTAKSDVWSFGVVLYELITGRRAVERNLPRNEQKLLDWVRPYVSDSKKFHHIIDPRLEGQDCTKSAHKLAILANKCLMKQPKSRPKMSEVVEILDSIINETVPVDECISEVVTETGEGNVVNLSVEVTEPEPAKQGNNYLKKVFEFRDKVSLKNKSIGRFDWKNWAPGLVRTW 451
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03579 451 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 176 384 - -
Trre9g03579 451 Gene3D Phosphorylase Kinase; domain 1 65 175 - -
Trre9g03579 451 CDD STKc_IRAK 97 375 - -
Trre9g03579 451 MobiDBLite consensus disorder prediction 1 34 - -
Trre9g03579 451 ProSiteProfiles Protein kinase domain profile. 91 376 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03579 451 Gene3D Transferase(Phosphotransferase) domain 1 176 390 - -
Trre9g03579 451 Pfam Protein tyrosine and serine/threonine kinase 97 372 IPR001245 GO:0004672|GO:0006468
Trre9g03579 451 SUPERFAMILY Protein kinase-like (PK-like) 73 372 IPR011009 -
Trre9g03579 451 PANTHER OS01G0588500 PROTEIN-RELATED 40 374 - -
Trre9g03579 451 FunFam Serine/threonine-protein kinase BIK1 63 175 - -
Trre9g03579 451 ProSitePatterns Protein kinases ATP-binding region signature. 97 124 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03579 Trre-Chr9 44491307 44493792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03579 79 372 Glycoside Hydrolase AT3G07070 51.525 2.24e-96 294
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Trre9g03579 PK_Tyr_Ser-Thr 3.6e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03579 - - gmx:100811825 706.827