Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03572 ATGGGCAGGCGAAAAAGTAAACCGCATCGATCAGGTGGGATACTAGTCGAAGCAAATGCTACCGCTGAAGCAGAACCAGATAAACATAATGCTGTAGAAGTAGGAGAAGAAGAAAAGTGTGATTTTGATACACCTTATTTTGTTGAGGTTGACCGGTCTGGTTGGTTGTCAGATGAACACCTTGATATTTCTGAAGTTGTTTTAAGTGATTTAAATTTAAGAGAAGGTTTTAATGGTTTTGAACTGTCTGAGGATTTTTATCAGGATCCCCAATTTTCGTTAAGATTTCGGTTGTGTAATGTAAGTAATATTCGTGGTCGAATCAAACTTGGCCATTGGCCTGTGTTACCTTATACTGATATTCATCTAGAGTTTGTTAAAAGAGCTATAGTTGACAATACCGAAACATGCACAGTGTTGTTATCTGGTATTTTTGATGGACCCGATGAAGGTGTTTCCGGTCTTGTTCACTTGACGAGTTTGAAATTTGTTACATTGAGGGCTGTTATTGGGATTAAGCTTTCTGAGGACATTCCTTCCCTTAGGATTAGGGTTGAGGTACTAAAGAGTGCCTTCGATGCATGCGTGTCACTTCTTGAGGTTTCTAGACAACTATGGAAAAAGAGTATGATGAATGTCATGTCTTGGCTACGACCAGAAATAACGACTTCAGAAGTTAAGTATGGGTTTAGTAGCTACATGGATATGGACATGGAAGTTGATTCTCAGGAAGAAACGGCAGACGACGGTGGCTATGCAGGGAAATGCTCGAGGTTTGATCCTGCTTGTTTTTATGAAGCCATTAAGCCTTCAAAAGCAGAGCCAATGCTTGAAGATGACATACCTGAATTACTTCCTGAACTTCGGCCATATCAACGGCGTGCAGCTTTTTGGATGGTAAAACGGGAAAAATTAATGGAAGAAAGTCAGAGTGAGAGTGAAAGAAATCTGTTCCATTCTCCACTATCTGTGCCGGTGGATTTTCTGGACACAAGGGCTAAAATGTTTTTCAATCCATTCAGTGGAAATATTTCCTTGTGCCCAGAGACTTCTTCACCTTATGTATTTGGAGGCATTCTTGCTGATGAGATGGGCTTGGGTAAAACTGTAGAATTGCTTGCTTGCATCTTTGCTCACCGTAAATCAGCATATGGAAGTGACATACTGATGGATTCAGTTCCCCAAGTCAATGGCGACGAAAAAGTTGCTTTAAAAAGACTAAAAAGAGAGCGTGTGGAGTGCATATGCGGAGCTGTGAGCGAAAGTATCAAATATGAAGGACTATGGGTTCAGTGTGATATTTGTGATGCTTGGCAACATGCAGATTGTGTTGGTTATTCACCTAAAGGAAAGTCACTGAAATCAAAACAAGGATTGGAAAGCAAGGCATATAAAACTACCATAGCTGTGAGAAATGGGGAATATGTATGTCAGATGTGCTCTGAACTAATACAGGCTAACGAAACTCCTATTGCCTCCAGTGCCACTCTCATTGTCTGCCCAGCTCCTATTTTGCCTCAGTGGCATGATGAAATTATACGTCATACACGTCCAGGAGCCTTGAAAACTTGTATTTATGAAGGTGTTCGTGAAACATCTTTCTCCAATAAACCTCTGATGGATGTCAGTGATCTTGCAAGTGCAGATATTGTACTAACTACATATGATGTGCTTAAAGAGGATTTGTCCCATGATTCTGATAGACATATAGGCGACCGACACCTTTTAAGATTTCAGAAAAGGTACCCGGTTATCCCAACTCTTCTTACCAGAATATACTGGTGGAGGATTTGTTTGGATGAGGCTCAAATGGTGGAGAGTACTGTTGCTACTGCTGCTACTGAAATGGCTCTAAGACTCCATTGCAAGCATCGTTGGTGTGTTTCAGGGACCCCAATTCAGCGAAAGCTTGATGACCTATATGGACTTCTAAGATTCATTAAAACCAGTCCCTTCAATATATACAGATGGTGGAGTGAAGTTATTCGAGACCCTTATGAGAAGGGAGATATGGGAGCTATGGAATTTACACACAGAATTTTCAAACAAATCATGTGGCGTTCTTCTAAACAACTTGTTGCTGATGAATTGGACCTTCCCTCCCAAGAGGAGTGCCTCTCTTGGCTTACACTATCACCAGTAGAAGAGCACTTTTACCAGAGGCAACATGAAGTTTGTGTTAGAGATTCCCATGACGTTATTGAAAATTTGAGAAATGATATTCTTAATAGAAAAGTCCCAGATTCTGTCTCTATGAGTGGTTCTTCTGATCCTTTAATCACTCACACCGAGGCAGGGAAGCTATTGAATGCTTTGCTGAAGCTTCGTCAGGCTTGTTGTCACCCCCAGGTTGGAAGTTCTGGACTGCGTTCCATACAGCAGTCACCTATGACAATAGAAGAAGTACTAATGGTCCTAATAAGCAAGACCAAGATAGAAGGCGAGGAAGCTCTCAGGAGGTTAGCTATTGCTCTGAATGCGCTTGCAGCAATATTTATAATACAAAAAGATTATTATCAAGCTGCTTTGCTGTACAATGAAGCTCTTACTTTGGCTGAAGAGTATTCTGAAGATTTCCGCTTGGATCCTTTGTTGAATATTCACATTCATCATAATCTCGCGGAAATATTCCCCCTGGCTCAGAATTTTACTTTGATCTTGCCATCAAAAGGATTTTCTGAAACTTCTGCAGTCGGCACAACTAAAAAGCATTTTATTGTAAAGGTTGATAATGATCAAGTGAAGAGGCATAAAATAAGTAGCTTTGATGACGCAAATTCAACAGTGGCTTCTGCAGAGCCATCAAATGTTGCATCTAGCCATTCAGAAAGTGACTTAAATGATAGGGAATTTGATGATTTGTCGGCAAGTTCCGTCAAATATCTGATAGCTGAATGTGAAGATTCAAAACAGAAATACTTATCTGTGTTCAGTTCAAAACTAGCCGCAGCTCAGCAAGAGTTTCAAAGTTCTTACACGCAGGTTTGTAAAGCATATCATGACACCGGAACAAATCAAACTACATTTTGGTGGTTAGACGCACTTCATTATGCTGAGCAGAACAAGGATTTCTCAACCGAGTTGATTAGAAAGGTTGAAGAAGCCCTCTCAGGAAATTCAAAATCGTCACGAATACCTGCTCGTTTTCGGAGCATAAGCTCTCTGAAGTATCAAATTCAAACCGATTTGGATCAATTAGGAGCCTCTAGGAAAGTGCTATTAGATCGTCTGCTAGAAATTGATCAGACAATGGAAAAACCAAAAGATGAAGATATTGAGCGCGTTGGTAAATGTCGAAATTGTCTACCTAACTGTGATGGCCCCCCATGCATTCTGTGTGAACTAGATGAATTGTTTCAGGCCTACGAAGCTAGACTCTTTGTTCTCAAGAACGAACGTGGTGGGATGATATCATCTGCTGAGGAGGCAGTAGATTTTCAAAAGAAAAGTTTTGCATTGAATCAATTTCTCTCAAAGCTATCAAAATCTAATCACAGTTCATCAGTGTCTGATATTGAACATGAAGAGTCCGGAAAAAGGAATGTTGGACAGAAAGTTGTGACTTCAAAATCGCCATCTATGCTGGAGGTTCTTCTTGGAGTTATAAAGAACTATTGTAAGACTTGGTTTGGAAAGGACAGTGTCTCGGCAGCCACCGAGCATTTGCATATTTTTGAGGCAATGCGAAAGGAGTATGTATATGCAAGGTCTTTGGCACTAGCTCAAACTCAATATCTACGTGCCCATGATGAATTAAAGATGGCGATTTCTCGTTTACGCCTAAAGGCAAATGAAGATGATGAATCTCTTGATGCTTTAGATGAAAATGAATTACATGCTGCTAGCTCAAACTATTCCCAGGAGAAGTTTATGTCATTGGCCTTGTTGTCACAGATAAAAGGAAAACTACGGTACTTAAAGGGTTTGGTTCAATCTAAGCAAAAACTGCCATTGGAAAGTCCAGATAAATCTTTATGCACTAAAGATACAAATGCTAACTCTACGGAAGAGAAGGGTGAACTCATACCTAGAACTTATGAGGAAACATGCCCAATTTGCCAAGAAAAACTAGGCCATCAGAGAATGGTGTTTCAATGTGGGCATGTTACTTGCTGTAAATGTTTATTTGCTATGTCTGAGCAAAGACTTCAACATAGCAAGACTCATAATTGGGTGATGTGCCCTACATGTAGACAGCATACTGATTTTGGAAACATTGCCTATGCTGTTGATGCACAAAATGAATCTCCCAATTCTTCAATGCTGCATACAATTGATGGCTGTGAAAAACATGAAGCATCTATTACTGTTAAAGGCTCATATGGAACCAAGATTGAAGCAATCACAAGAAGAATCTTGTGGATAAAGGCTACAGATCATAAATCAAAAGTTCTTGTATTTTCAAGTTGGAATGATGTACTTGATGTATTGGAACATGCATTTGCCGCCAATAACATCACCTTCATCCGGATGAAGGGAGGCAGGAAAGCACACACTTCCATCAGTCAATTTAGAGGAAAACCGAATGGCACAAAAGGAAGCGAGGGATCAGAACCAAAATCTATTCAGGTGCTATTGCTTTTAATCCAACATGGAGCCAATGGCCTCAATCTTTTGGAAGCACAACATGTGGTCCTTGTAGAGCCTTTACTCAATCCAGCTGCCGAAGCACAAGCAATCAGTCGTGTACATCGCATTGGCCAAAAAAATAAGACCCTCATTCATCGTTTCTTAGTAAAAGACACAGTTGAAGAGAGCATATATAAATTGAACAGAAGCAGAAGCAAAAATAATCATTCATTCATTAGTGGCAACACAAAAAATCAAGATCAACCTGTTTTGACCCTTAAAGATGTGGAATCCTTGTTGGCAGAAGCACCATTAACGGCGCCAGAAATCGATGAAACTCCTACTACAAATACAAACCTGAGAGACTTGCCACCATCAGTTGCTGCAGCTATAGCAGCTGAGAGAAGACATAATGAGCAAAGAACATGA 4998 0.4022 MGRRKSKPHRSGGILVEANATAEAEPDKHNAVEVGEEEKCDFDTPYFVEVDRSGWLSDEHLDISEVVLSDLNLREGFNGFELSEDFYQDPQFSLRFRLCNVSNIRGRIKLGHWPVLPYTDIHLEFVKRAIVDNTETCTVLLSGIFDGPDEGVSGLVHLTSLKFVTLRAVIGIKLSEDIPSLRIRVEVLKSAFDACVSLLEVSRQLWKKSMMNVMSWLRPEITTSEVKYGFSSYMDMDMEVDSQEETADDGGYAGKCSRFDPACFYEAIKPSKAEPMLEDDIPELLPELRPYQRRAAFWMVKREKLMEESQSESERNLFHSPLSVPVDFLDTRAKMFFNPFSGNISLCPETSSPYVFGGILADEMGLGKTVELLACIFAHRKSAYGSDILMDSVPQVNGDEKVALKRLKRERVECICGAVSESIKYEGLWVQCDICDAWQHADCVGYSPKGKSLKSKQGLESKAYKTTIAVRNGEYVCQMCSELIQANETPIASSATLIVCPAPILPQWHDEIIRHTRPGALKTCIYEGVRETSFSNKPLMDVSDLASADIVLTTYDVLKEDLSHDSDRHIGDRHLLRFQKRYPVIPTLLTRIYWWRICLDEAQMVESTVATAATEMALRLHCKHRWCVSGTPIQRKLDDLYGLLRFIKTSPFNIYRWWSEVIRDPYEKGDMGAMEFTHRIFKQIMWRSSKQLVADELDLPSQEECLSWLTLSPVEEHFYQRQHEVCVRDSHDVIENLRNDILNRKVPDSVSMSGSSDPLITHTEAGKLLNALLKLRQACCHPQVGSSGLRSIQQSPMTIEEVLMVLISKTKIEGEEALRRLAIALNALAAIFIIQKDYYQAALLYNEALTLAEEYSEDFRLDPLLNIHIHHNLAEIFPLAQNFTLILPSKGFSETSAVGTTKKHFIVKVDNDQVKRHKISSFDDANSTVASAEPSNVASSHSESDLNDREFDDLSASSVKYLIAECEDSKQKYLSVFSSKLAAAQQEFQSSYTQVCKAYHDTGTNQTTFWWLDALHYAEQNKDFSTELIRKVEEALSGNSKSSRIPARFRSISSLKYQIQTDLDQLGASRKVLLDRLLEIDQTMEKPKDEDIERVGKCRNCLPNCDGPPCILCELDELFQAYEARLFVLKNERGGMISSAEEAVDFQKKSFALNQFLSKLSKSNHSSSVSDIEHEESGKRNVGQKVVTSKSPSMLEVLLGVIKNYCKTWFGKDSVSAATEHLHIFEAMRKEYVYARSLALAQTQYLRAHDELKMAISRLRLKANEDDESLDALDENELHAASSNYSQEKFMSLALLSQIKGKLRYLKGLVQSKQKLPLESPDKSLCTKDTNANSTEEKGELIPRTYEETCPICQEKLGHQRMVFQCGHVTCCKCLFAMSEQRLQHSKTHNWVMCPTCRQHTDFGNIAYAVDAQNESPNSSMLHTIDGCEKHEASITVKGSYGTKIEAITRRILWIKATDHKSKVLVFSSWNDVLDVLEHAFAANNITFIRMKGGRKAHTSISQFRGKPNGTKGSEGSEPKSIQVLLLLIQHGANGLNLLEAQHVVLVEPLLNPAAEAQAISRVHRIGQKNKTLIHRFLVKDTVEESIYKLNRSRSKNNHSFISGNTKNQDQPVLTLKDVESLLAEAPLTAPEIDETPTTNTNLRDLPPSVAAAIAAERRHNEQRT 1665
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03572 1665 SUPERFAMILY RING/U-box 1344 1402 - -
Trre9g03572 1665 MobiDBLite consensus disorder prediction 926 942 - -
Trre9g03572 1665 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SHPRH FAMILY MEMBER 3 1664 - -
Trre9g03572 1665 Gene3D - 351 392 IPR038718 -
Trre9g03572 1665 Gene3D - 481 709 IPR038718 -
Trre9g03572 1665 MobiDBLite consensus disorder prediction 926 948 - -
Trre9g03572 1665 SUPERFAMILY FYVE/PHD zinc finger 410 482 IPR011011 -
Trre9g03572 1665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 696 1635 IPR027417 -
Trre9g03572 1665 CDD SF2_C_SNF 1441 1578 - -
Trre9g03572 1665 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1447 1620 IPR001650 -
Trre9g03572 1665 Pfam Helicase conserved C-terminal domain 1444 1567 IPR001650 -
Trre9g03572 1665 Pfam PHD-finger 414 482 IPR019787 -
Trre9g03572 1665 ProSiteProfiles Zinc finger RING-type profile. 1350 1398 IPR001841 -
Trre9g03572 1665 Pfam SNF2-related domain 291 784 IPR000330 GO:0005524|GO:0140658
Trre9g03572 1665 ProSitePatterns Zinc finger PHD-type signature. 414 480 IPR019786 -
Trre9g03572 1665 SMART helicmild6 1475 1567 IPR001650 -
Trre9g03572 1665 CDD PHD_TCF19_like 415 480 - -
Trre9g03572 1665 MobiDBLite consensus disorder prediction 1 26 - -
Trre9g03572 1665 CDD DEXQc_SHPRH 288 688 - -
Trre9g03572 1665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1337 1418 IPR013083 -
Trre9g03572 1665 Gene3D - 1420 1640 IPR027417 -
Trre9g03572 1665 SMART PHD_3 413 481 IPR001965 -
Trre9g03572 1665 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 272 687 IPR027417 -
Trre9g03572 1665 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 400 480 IPR013083 -
Trre9g03572 1665 SMART ring_2 1350 1397 IPR001841 -
Trre9g03572 1665 SMART ultradead3 284 657 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03572 Trre-Chr9 44439919 44453189 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03572 221 782 RAD5 or RAD16-like Gene Family AT5G22750 26.232 7.14e-42 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Trre9g03572 SNF2_N 5.2e-85 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03572 K15710 - gmx:100776659 2656.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03572 9 44439919 44453189 Trre9g03572 9 44439919 44453189 ECH