Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03570 ATGGAACCACATCTGAATGCTGCAGCTTCGTCCATGCTGAGAAGCAGCAGAAACATACCTTGTCTTCCTCAACCATTACTAGCTTTTACTACCAGAATGCTTTCTTCTTCACCACCATCTTCTTCTTCTGTAACTTCTTCATCTGAAACCAAATTAGGTTATTCTTCTATAAACCCTAAACCTTCATTCAAGAACCTTTCTCTATTCTCAAACAATCATTCTCTTCAAAGCATGACGACGGTTTCAAAATGTTTCTCTCAGTCTGATTCAATACAAGTTTCTGAATCTGATTATTCAATTGATTCTCTTGTTGTGGTTTCGTTTTATAAGTTTGCGGATTTCCCTGACCATGCTGTTTTTCGTGATCCATTGAAGCAACTGTGTCAACAATTGCTTGTTTCAGGCGGTATCATTCTTGCGCCTGAAGGAATTAATGGAAGCCTATGTGGCACGAGGGAGTCGGTGGAGAAAGTTCTTGCATTTATTCAGAGTGATGATCGTCTGAAAGGTCTAAGACGTATTGAATCTCCTGTCAGTCCTGAGGAGGAGGCCATCCATCAGGAACATCATGGACACAGTGCCAGTTCTCCTCTTGCTGCTGGGGAGGATGTACCTTTCCGATGGGACCATGTGAGAGTCAAGTTGAAGAAAGAGATTGTCACTCTTGGAATGCCGACGGTATCACCTATGGAAAGGGTTGGAAAATATATCAGCCCAAAGGAATGGAATTCTTTGATTAGTGATCCGGATACAGTAGTAATTGATGTGCGGAATAACTATGAAACGAGAATAGGAAAGTTTAAAGGAGCAGTTGATCCATGTACGACATCATTTCGTGAATTCCCATCTTGGGTGGAGGAACGTTTTGAGCTTGCCAGAACAGATGCTGAGCATCCAAAAGTAGATGTAAACCAGTCAGACCAAAATGCTGAAAAAGAAACAGAGAATCCGAAACAACATTTGCCACGTGTTGCAATGTATTGTACTGGGGGTATTCGATGTGAGAAAGCTTCAAGTTTACTTCTCAGCAAAGGTTTTAAAGAGGTTTATCACCTGGAAGGTGGAATTCTGAAATATCTTGAGGAGGTTCCAGAGAGACAAAGTCTATGGGAAGGAGAGTGCTTTGTTTTCGATAAGCGAGTCTCCGTCGAGCATGGTTTGGCACCTGGAAATTTCAAGCTATGCTATGGTTGTAAGCAGCCTGTGAGTGATGCAGACATGGAATCCCCAGAATATGAATATGGAGTCTCCTGTCCTTACTGTTTTGCACAGAAATCAGAAGAAGAGAAGGAGAGAGCTCGAGCTCGGCAAAAACAATTTGAGAGATGGGGAATCATAGGTGGTCCTGACAAGGGCCGTCGGCCGACACAGGAGTCAGACGGTGCTAGCAGCAATCAAAATCAACTTTCAAAGTCTGTTTAA 1422 0.4269 MEPHLNAAASSMLRSSRNIPCLPQPLLAFTTRMLSSSPPSSSSVTSSSETKLGYSSINPKPSFKNLSLFSNNHSLQSMTTVSKCFSQSDSIQVSESDYSIDSLVVVSFYKFADFPDHAVFRDPLKQLCQQLLVSGGIILAPEGINGSLCGTRESVEKVLAFIQSDDRLKGLRRIESPVSPEEEAIHQEHHGHSASSPLAAGEDVPFRWDHVRVKLKKEIVTLGMPTVSPMERVGKYISPKEWNSLISDPDTVVIDVRNNYETRIGKFKGAVDPCTTSFREFPSWVEERFELARTDAEHPKVDVNQSDQNAEKETENPKQHLPRVAMYCTGGIRCEKASSLLLSKGFKEVYHLEGGILKYLEEVPERQSLWEGECFVFDKRVSVEHGLAPGNFKLCYGCKQPVSDADMESPEYEYGVSCPYCFAQKSEEEKERARARQKQFERWGIIGGPDKGRRPTQESDGASSNQNQLSKSV 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03570 473 SMART rhod_4 237 365 IPR001763 -
Trre9g03570 473 Pfam Rhodanese-like domain 238 361 IPR001763 -
Trre9g03570 473 ProSiteProfiles Rhodanese domain profile. 247 368 IPR001763 -
Trre9g03570 473 MobiDBLite consensus disorder prediction 458 473 - -
Trre9g03570 473 Hamap tRNA uridine(34) hydroxylase [trhO]. 101 405 IPR020936 -
Trre9g03570 473 MobiDBLite consensus disorder prediction 432 473 - -
Trre9g03570 473 SUPERFAMILY Rhodanese/Cell cycle control phosphatase 216 394 IPR036873 -
Trre9g03570 473 CDD RHOD_YceA 234 361 - -
Trre9g03570 473 Gene3D - 91 220 - -
Trre9g03570 473 PANTHER THIOSULFATE SULFURTRANSFERASE/RHODANESE-LIKE DOMAIN-CONTAINING PROTEIN 2 100 454 IPR020936 -
Trre9g03570 473 MobiDBLite consensus disorder prediction 179 198 - -
Trre9g03570 473 Gene3D - 221 402 IPR036873 -
Trre9g03570 473 MobiDBLite consensus disorder prediction 296 318 - -
Trre9g03570 473 Pfam UPF0176 acylphosphatase like domain 104 219 IPR040503 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03570 Trre-Chr9 44432287 44436509 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03570 76 460 Sulfurtransferasese or Rhodanese AT2G40760 74.103 0.0 593
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03570 - - psat:127118628 770
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03570 9 44432287 44436509 Trre9g03570 9 44432287 44436509 ECH