Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03565 ATGGAAGAAGTCATGAATTCTATCATGCGTGCTTTTGAATTGGCCAAAGAACATGAACTTGAACTACCAAACATTTCCAACAACCTTGAAATGCTATTTTCATCCATTGATGAAGTTGAAAAAGCATTTAGTTCTGCAAAACAAAGATTAATGATGATTATGTCATCATCACAAAATGACATGATGACAAAAGTTTCTAATTCTTTTGCTGAAATTTTGTCTCATGATGTTTTCATGCAAAACAATCATGATCATGGTCAAATGGGTGGAAGTGGAACTTCAATGCATGCAGATTCATCAATGGATCGATTGCTTCTAATGCAACAAACTTTTGAGATGATAAGGTCTAGGGGAACTTTGATGATTGGTGAAATGGGTGGGAGAGATGTGGAAGGTTTAGAGAAATCTAAAGGGTCAGAAGGAGGAGAAATGCAAGGAATAGAGGAACCACCATCACGACCAAAAAAAAGTAGGAAGAATGATTTGGAGAGGAGAACTGAGATGTTTCCAGCACCTCAGATTGGTAACACTGAAATGCCACCAGAAGATGGCTTCACTTGGAGAAAATATGGACAAAAAGAGATACTTGGCCGCAAGTATCCAAGGAGTTACTATAGGTGCACACACCAAAAATTATATTTGTGCCCTGCCAAGAAACAAGTACAAAGACTAGATAACAATCCTAACATAGTAGAAGTGACATATAGAGGTGAACACATTTGTCACAAATCCTTAACAGCACCATCATCATATCCACCACCACCAAACCTACTTGTCAACATTAATACTACTCAAGCTACCATTCCTCCTGAGGCATGGCCGCCAGCGGTGAACCTTGGCCTCAGGGGTGGAAATGGTAGTGGTGGACCATCTACTTCAAGATTCGGAGGCATTGATTATCCAGTAACCGATATGGCCGATGCAATGTTCAACTCCGGTAGTAGTAGTGGCAATAGCATGGAATCGCTCTTTTATCCAAGTGAAGATAAATGGGAACCTGATGAAAAGATAAATTAA 1017 0.3953 MEEVMNSIMRAFELAKEHELELPNISNNLEMLFSSIDEVEKAFSSAKQRLMMIMSSSQNDMMTKVSNSFAEILSHDVFMQNNHDHGQMGGSGTSMHADSSMDRLLLMQQTFEMIRSRGTLMIGEMGGRDVEGLEKSKGSEGGEMQGIEEPPSRPKKSRKNDLERRTEMFPAPQIGNTEMPPEDGFTWRKYGQKEILGRKYPRSYYRCTHQKLYLCPAKKQVQRLDNNPNIVEVTYRGEHICHKSLTAPSSYPPPPNLLVNINTTQATIPPEAWPPAVNLGLRGGNGSGGPSTSRFGGIDYPVTDMADAMFNSGSSSGNSMESLFYPSEDKWEPDEKIN 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03565 338 SMART WRKY_cls 181 243 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03565 338 MobiDBLite consensus disorder prediction 128 142 - -
Trre9g03565 338 Gene3D WRKY domain 171 244 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03565 338 ProSiteProfiles WRKY domain profile. 182 239 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03565 338 MobiDBLite consensus disorder prediction 311 338 - -
Trre9g03565 338 MobiDBLite consensus disorder prediction 127 162 - -
Trre9g03565 338 Pfam WRKY DNA -binding domain 182 241 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03565 338 SUPERFAMILY WRKY DNA-binding domain 178 242 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03565 338 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 250 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03565 Trre-Chr9 44390619 44393748 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03565 1 324 WRKY Transcription Factor Family AT2G40740 35.435 4.83e-49 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03565 WRKY 7.7e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03565 - - mtr:11424132 483.026