Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03564 ATGGAAGAAGTCATGAATTCTATCATGCGTGCTTTTGAATTGGCCAAAGAACATGAACTTGAACTACCAAACATTTCCAACAACCTTGAAATGCTATTTTCATCCATTGATGAAGTTGAAAAAGCATTTAGTTCTGCAAAACAAAGATTAATGATGATTATGTCATCATCACAAAATGACATGATGACAAAAGTTTCTAATTCTTTTGCTGAAATTTTGTCTCATGATGTTTTCATGCAAAACAATCATGATCATGGTCAAATGGGTGGAAGTGGAACTTCAATGCATGCAGATTCATCAATGGATCGATTGCTTCTAATGCAACAAACTTTTGAGATGATAAGGTCTAGGGGAACTTTGATGATTGGTGAAATGGGTGGGAGAGATGTGGAAGGTTTAGAGAAATCTAAAGGGTCAGAAGGAGGAGAAATGCAAGGAATAGAGGAACCACCATCACGACCAAAAAAAAGCAGTAGGAAGAATGATTTGGAGAGGAGAACTGAGATGTTTCCAGCACCTCAGATTGGTAACACTGAAATGCCACCAGAAGATGGCTTCACTTGGAGAAAATATGGACAAAAAGAGATACTTGGCCGCAAGTATCCAAGGAGTTACTATAGGTGCACACACCAAAAATTATATTTGTGCCCTGCCAAGAAACAAGTACAAAGACTAGATAACAATCCTAACATAGTAGAAGTGACATATAGAGGTGAACACATTTGTCACAAATCCTTAACAGCACCATCATCATATCCACCACCACCAAACCTACTTGTCAACATTAATACTACTCAAGCTACCATTCCTCCTGAGGCATGGCCGCCAGCGGTGAACCTTGGCCTCAGGGGTGGAAATGGTAGTGGTGGACCATCTACTTCAAGATTCGGAGGCATTGATTATCCAGTAACCGATATGGCCGATGCAATGTTCAACTCCGGTAGTAGTAGTGGCAATAGCATGGAATCGCTCTTTTATCCAAGTGAAGATAAATGGGAACCTGATGAAAAGATAAATTAA 1020 0.3961 MEEVMNSIMRAFELAKEHELELPNISNNLEMLFSSIDEVEKAFSSAKQRLMMIMSSSQNDMMTKVSNSFAEILSHDVFMQNNHDHGQMGGSGTSMHADSSMDRLLLMQQTFEMIRSRGTLMIGEMGGRDVEGLEKSKGSEGGEMQGIEEPPSRPKKSSRKNDLERRTEMFPAPQIGNTEMPPEDGFTWRKYGQKEILGRKYPRSYYRCTHQKLYLCPAKKQVQRLDNNPNIVEVTYRGEHICHKSLTAPSSYPPPPNLLVNINTTQATIPPEAWPPAVNLGLRGGNGSGGPSTSRFGGIDYPVTDMADAMFNSGSSSGNSMESLFYPSEDKWEPDEKIN 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03564 339 MobiDBLite consensus disorder prediction 312 339 - -
Trre9g03564 339 MobiDBLite consensus disorder prediction 127 186 - -
Trre9g03564 339 Pfam WRKY DNA -binding domain 183 242 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03564 339 MobiDBLite consensus disorder prediction 128 142 - -
Trre9g03564 339 MobiDBLite consensus disorder prediction 149 167 - -
Trre9g03564 339 SMART WRKY_cls 182 244 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03564 339 Gene3D WRKY domain 172 245 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03564 339 SUPERFAMILY WRKY DNA-binding domain 179 243 IPR036576 GO:0003700|GO:0006355|GO:0043565
Trre9g03564 339 ProSiteProfiles WRKY domain profile. 183 240 IPR003657 GO:0003700|GO:0006355|GO:0043565
Trre9g03564 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 11 251 IPR044810 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03564 Trre-Chr9 44390619 44393748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03564 1 325 WRKY Transcription Factor Family AT2G40740 35.435 2.26e-50 168
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Trre9g03564 WRKY 7.8e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03564 - - mtr:11424132 487.263