Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03546 ATGTCTCTACCAAGGCTAGGAATAGGTGATAATGAAGGTGAAAACAATGTTGTTACTTTGTTGGAAAAAAGTGTGTGTTTGAATGGTTCAAAACCAAAAGAGTTCAACTATATGGGATTATCATCATCTAATTGTTTATCAGTGGATAGTTCAGTTCCAAAAATTCAATCTTTTTCTGATGAGACTAAAAGTAATTTGAATCTTAAAGCTACTGAGCTTAGATTGGGACTTCCTGGATCATTGTCACCCGAAAGAGATTCATCGGATCATTTTTTGAGAAGTTCAATTCAGTTCGATGAAAAGCCTCTTTTTCCTTTACACCCTCAAAAAGATGATCATCTTTTCGAATCAAAGCCGGCGATTTTAGGTAACAAAAGAGGATTTTCTGATGCCATGAATGTTTTCTCAGAGGGGAAATTGCAGCCTAGCTCTAAAATGCTTGAGAGTGTTGTGGCGCAGAAAGTGAAAGTCGATGAAATAGTAACAGTTAAGGTTGGTCTTGAGAGGCCCCACGGTGTCGGTGAAAGCAGACAAAATCTTAATGGTTCTGCAAATAATGGAAATAGCATTGCACCAGCTGCCAAGGCACAGGTTATTGGTTGGCCTCCAATAAGATCATTTAGGAAAAATTCACTGACAAATGCTTCAAAGAATACCGAAGAGGTTGATGGAAAATTGGGATCGGGAAGTGCTGTGTTTGTGAAGGTTAGCATGGATGGTGCTCCTTATTTGAGAAAAGTAGACTTGAAGAATTACACTGCATATTCTCAACTATCTTCTGCTCTTGAGAAAATGTTCAGCTGTTTCACCATAGGTCAATGTGAATCTCATGGAAATCAGATGCTGAATGAAACCAAGCTGAGGGATCTGCTTCATGGATCAGAATATGTTATTACTTATGAGGATAAAGATGGTGATTGGATGCTTGTTGGCGATGTTCCTTGGGAGATGTTTATTGATACATGCAAGAGACTAAGAATCATGAAGAGCTCTGATGCCATTGGTCTAGCCCCTAGAGCAGTTGAAAAAAGTAAAAGCAGGAACTAG 1047 0.3878 MSLPRLGIGDNEGENNVVTLLEKSVCLNGSKPKEFNYMGLSSSNCLSVDSSVPKIQSFSDETKSNLNLKATELRLGLPGSLSPERDSSDHFLRSSIQFDEKPLFPLHPQKDDHLFESKPAILGNKRGFSDAMNVFSEGKLQPSSKMLESVVAQKVKVDEIVTVKVGLERPHGVGESRQNLNGSANNGNSIAPAAKAQVIGWPPIRSFRKNSLTNASKNTEEVDGKLGSGSAVFVKVSMDGAPYLRKVDLKNYTAYSQLSSALEKMFSCFTIGQCESHGNQMLNETKLRDLLHGSEYVITYEDKDGDWMLVGDVPWEMFIDTCKRLRIMKSSDAIGLAPRAVEKSKSRN 348
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03546 348 ProSiteProfiles PB1 domain profile. 231 330 IPR000270 GO:0005515
Trre9g03546 348 FunFam Auxin-responsive protein 227 340 - -
Trre9g03546 348 Pfam AUX/IAA family 71 339 IPR033389 -
Trre9g03546 348 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 66 335 IPR003311 GO:0005634|GO:0006355
Trre9g03546 348 SUPERFAMILY CAD & PB1 domains 227 329 - -
Trre9g03546 348 Gene3D - 227 342 - -
Trre9g03546 348 Coils Coil 341 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03546 Trre-Chr9 44205825 44209101 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03546 215 338 B3 DNA Binding Superfamily AT4G23980 29.839 2.41e-09 57.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Trre9g03546 AUX_IAA 2.1e-87 CL0072