Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03543 ATGGAGCATCAATCCCTCACTTCTCATCCCAATTCCGCTAATTCATCCCCTAACTCTCGCGAATTGGTCGAAAACAACGATCACCGTTCACCATTCGATGAACAACCACCACCACCACCACAACCACCTTCCAATTCCAACAGAGTCAAGCTAATGTGTAGCTACGGTGGAAAAATTCAACCTAGGCTACACGATCATCACTTTACGTACATCGGCGGAGACACCAAAATCCTCACCGTCGATCGTGCCGTCAAATTAACCACACTCGTTGGTAAGCTTTCAACAATGGCGAATTGTGATGTTTGCTTTAAGTATCAACTCCCTGGTGAAGATCTCGATGCTTTGATCTCCGTTTGCAACGAAGAAGATCTCGATCATATGATGATCGAGTACGATCGTTTGTGTCGCGTTTCGCCTAAACCTGCTAGGTTGAGACTATTTCTCTTCCCTGCACCTGTCATCATCAACAACAATAAGGACGATGAAGACGCATCTGCTGATTCTTCTGTCTCCGCTGTAATTCTCGCAGCAATGGAGGATTCCAAATCGGAAGGACAATGGTTCATCGACGCGCTCAATTCCGCTAATGTTCCACCGTTGGAAGAATCTCCTCCGCCTCCTCCGACGTTGAATCCAGATTATCTGTTTGGTTTAGATAAGCCGTATTCTGAAACTCCGACTCCGACGGGGAATGAAGTGGAATTTCCGGTAACTGTTCCGGATTTTCCGGCGACGGAAACTGAATGTGGTCCCGAAACGGTTAAAGAAACTGAGATTCAGGAACTTGAGAAAATGGAGTTTGTGAATATTGAACAGGAAGTGAAAGTTGACGGAGAAAACGGCGGAATTAACGGTGTTTTTGACTGTAACACTGAAGAAAACGCGGAAAAAGTGATTCCGTTAGTTACTAATGAACCACCTGTTCAGAATCAGACTCAATCTCCGGATCAAATTCAAATCCAACCCACCGGTTCATTTCAGGTTCAGATTCCTGAACCGGTACCGGTTCAGTCAATATTTTCTCCTGTAAGGCATCATAATGTGGCTCCTGGTGGTTACTCAGTGGGGTATCCACATGAACCGGCTCCGGTTTATCTGATTCAAACATCTTCAGGATTGTATCAAGCACTGAAGCCGATAACCGGACCACACGGTCAACCGGTTTATTTCGCGTATGCGCAAATTGTGAACCAGTTTGGTTACAATGGTTCAGGGGCACCCGGTGTGGTTTCTGAGCATGGATATTCTAATAGATCTTATGTGTCTGACAGATCAGCTTTGCCATTGTAG 1290 0.4558 MEHQSLTSHPNSANSSPNSRELVENNDHRSPFDEQPPPPPQPPSNSNRVKLMCSYGGKIQPRLHDHHFTYIGGDTKILTVDRAVKLTTLVGKLSTMANCDVCFKYQLPGEDLDALISVCNEEDLDHMMIEYDRLCRVSPKPARLRLFLFPAPVIINNNKDDEDASADSSVSAVILAAMEDSKSEGQWFIDALNSANVPPLEESPPPPPTLNPDYLFGLDKPYSETPTPTGNEVEFPVTVPDFPATETECGPETVKETEIQELEKMEFVNIEQEVKVDGENGGINGVFDCNTEENAEKVIPLVTNEPPVQNQTQSPDQIQIQPTGSFQVQIPEPVPVQSIFSPVRHHNVAPGGYSVGYPHEPAPVYLIQTSSGLYQALKPITGPHGQPVYFAYAQIVNQFGYNGSGAPGVVSEHGYSNRSYVSDRSALPL 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03543 429 MobiDBLite consensus disorder prediction 1 21 - -
Trre9g03543 429 Gene3D - 68 150 - -
Trre9g03543 429 CDD PB1_UP2 52 149 - -
Trre9g03543 429 MobiDBLite consensus disorder prediction 1 48 - -
Trre9g03543 429 SMART PB1_new 63 151 IPR000270 GO:0005515
Trre9g03543 429 SUPERFAMILY CAD & PB1 domains 65 151 - -
Trre9g03543 429 PANTHER OS05G0427100 PROTEIN-RELATED 11 366 - -
Trre9g03543 429 Pfam PB1 domain 68 150 IPR000270 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03543 Trre-Chr9 44174483 44175772 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03543 47 194 MAP Kinase Kinase Kinase AT5G57610 36.486 3.55e-23 100
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03543 - - tpra:123920161 717.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03543 9 44174483 44175772 Trre9g03543 9 44174483 44175772 ECH