Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03535 ATGGGCGAAGAATTATCAGGTTTGACAATCAAAGAATTACAGAATTTGGAGAACCAATTGGAAATCAGCATTCGTGGTGTTCGTGTGAAAAAGGAGCAACTTTTTATGGATGAAATACAAGAGCTAAATCGAAAGGGAGACATCATACACCAAGAAAATGTGGAACTATATAGGAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAAATTCTGTTCTCACAGATGGTCTAGGCATAGGAGAAGGAGACGATTCCCACGTGCCTGTGAATCTCCAGCTCAGCCAGCCACAGCAACAACACCTCAAGGCACCCTCAGCAACTACAAAACTGGGCAGACTACAATTGCATTGA 357 0.4174 MGEELSGLTIKELQNLENQLEISIRGVRVKKEQLFMDEIQELNRKGDIIHQENVELYRKVYGTKDKNGTNRNSVLTDGLGIGEGDDSHVPVNLQLSQPQQQHLKAPSATTKLGRLQLH 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03535 118 MobiDBLite consensus disorder prediction 63 118 - -
Trre9g03535 118 Pfam K-box region 1 60 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g03535 118 ProSiteProfiles K-box domain profile. 1 67 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g03535 118 MobiDBLite consensus disorder prediction 90 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03535 Trre-Chr9 44107932 44108686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03535 1 102 MADS-box Gene Family AT3G57230 49.138 7.50e-31 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03535 K09264 - gmx:100812413 186.808