Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03534 ATGAGATCAGTAATTGATCGATACAACAAATCAAAAGAAGAACATAATCAACTTGGGAGTTTAACCTCGGAAATTAAGTTTTGGCAAAGGGAGGCAGCAATGTTGAGACAACAATTGCATAATTTGCAAGAAAGTCACCGGCAAATAATGGGCGAAGAATTATCAGGTTTGACAATCAAAGAATTACAGAATTTGGAGAACCAATTGGAAATCAGCATTCGTGGTGTTCGTGTGAAAAAGGAGCAACTTTTTATGGATGAAATACAAGAGCTAAATCGAAAGGGAGACATCATACACCAAGAAAATGTGGAACTATATAGGAAGGTCTATGGAACAAAAGATAAGAATGGAACAAACAGAAATTCTGTTCTCACAGATGGTCTAGGCATAGGAGAAGGAGACGATTCCCACGTGCCTGTGAATCTCCAGCTCAGCCAGCCACAGCAACAACACCTCAAGGCACCCTCAGCAACTACAAAACTGGGACTACAATTGCATTGA 501 0.3992 MRSVIDRYNKSKEEHNQLGSLTSEIKFWQREAAMLRQQLHNLQESHRQIMGEELSGLTIKELQNLENQLEISIRGVRVKKEQLFMDEIQELNRKGDIIHQENVELYRKVYGTKDKNGTNRNSVLTDGLGIGEGDDSHVPVNLQLSQPQQQHLKAPSATTKLGLQLH 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03534 166 Coils Coil 18 45 - -
Trre9g03534 166 ProSiteProfiles K-box domain profile. 25 116 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g03534 166 MobiDBLite consensus disorder prediction 146 166 - -
Trre9g03534 166 Pfam K-box region 24 109 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03534 Trre-Chr9 44101742 44108686 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03534 1 151 MADS-box Gene Family AT3G57230 51.515 2.35e-52 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03534 K09264 - gmx:100812413 261.922