Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03531 ATGTCCTCACAAGCAGTGCAGTTGCATGTCAAGAAAAATCATGTGGTTATGGACAATGGTATACTACAAGTGTATTTATCAAATCCAGATGGATTTGTGATTAGAATACAATATAATGGCATTGATAATCTGCTTGAAGCTCTTAACGAAAAGAATAATAGAGGGTATTGGGATGATGTTTGGAGTGAAGCAGGAAGCACCGGAACAACCGGGACGTCCGAGCGGATTGTGGGAACAAGTTTTAAGGTTATAATGGAAACAGAAGAACAAGTTGAAATCTCATTTTCAAGAATTTGGGATCCATCTCTAAAGGGGAAGCAATCGGCTCTAAATATAGACAAAAGGTATGTGATGCTACGCAATTCGTCAGGATTATACTCTTATGCTATCTTTGAGCATCTAAAGGAGTGGCCGGCTTTCAACATACCTCAAATAAGGATTGTTTATAAGCTTCGTAAAGACAAGTTTCATTATATGGCTGTGGCGGATAACAGGCAAAGGTTGATGCCTCTACCTGATGATCGCTTACCTGAAAGAGGAGAAGAACTTATTCCTCCAGAAGCTGTTTTGCTTGTTAATCCAATAGAACCAGAGTTCGCAGGAGAGGTTGATGACAAGTACCAATACTCAAGTGAGAACATAGACCTTAAGGTTCATGGATGGATAAGTACAAAATCTGAAACAAATCCAGCAACAGGGTTTTGGGTAATCATACCTAGCAATGAGTTTCGATCAGGTGGCCTTGTTAAACAAAATCTTACCTCCCATGTTGGCCCCATCAGTCTTTCAATGTTTCTTAGTGCTCATTACGCCGTAGAGGATATAGTTCTTAAACTCCAGCCCAATGAGCCATGGAAGAAAGTTTTTGGGCCAACTTTTGTCTATCTTAACACCTTGTTGGATGGTCATGAGGATCCACTAGAGCTTTGGGAGGACGCCAAATACCAGATGAACAAGGAAGTACAAAGTTGGCCCTATGATTTTCCAGCTTCAGATGATTTTCAAAAGTCAAACCAACGTGGCAGCGTTTGTGGCACATTACTAGTTCGTGACAGGTGTGTAAGTGACGAGTGCATAATAGCGCAAGGTGCATACATAGGATTGGCACCACCGGGAGATGTTGGATCTTGGCAAAGAGAATGCAAGGGATACCAATTTTGGACCAAAGCAGACGAGGAAGGCTACTTTTCAATCAATAATATAAGGAGTGGGGATTACAATCTATATGCATGGGTTCCAGGTTTCATTGGAGAATATTGGAATAATGAAATCCTCAAAATAACTCCAGGTTGTGAAATAGATCTTGGTGACATAATTTATGAGCCTCCAAGAGATGGTCCAACATTATGGGAGATTGGAATTCCTGATCGTTCTGCTGCTGAGTTCTATGTTCCAGATCCTAATCCAAAATTCATAAACAAGCTTTATATTGACCATCCAGATAAGTTTAGGCAATATGGCTTGTGGGAAAGATATGCAGAGTTATACCCAAATGAAGATTTGGTTTATACAGTTGGAATTAGTGACTATACAACAGATTGGTTCTATGCCCAGGTCACCAGGAAGAAAAATGATGGTAGTTACCAAGGAACTACATGGCAAATTAAGTTCAACCTAGATGATGTGGAAGCAAATGGAATATATAAATTGCGATTGGCTCTTGCAAGTGCAAATGTCTCTGAGTTACAAGTTAGAGTAAATGATGTGAAACAAGATCCTCCACTATTTACTACGGGTGTAATTGGAAAGGACAATGCAATAGCTAGACATGGAATTCATGGACTCTATTGGCTCTTCAACATTGATGTGTCAAGTATTTTACTATCCAAAGGAGATAATACTATATTTCTAACACAAACTATGGCTACTGGTCCCTTGGCTCGTTTTCAAGGAATAATGTATGACTATATTCGTTTAGAAAGTCCCAATTCCGATTCTTTCATTAAAAAAATTTAG 1956 0.3937 MSSQAVQLHVKKNHVVMDNGILQVYLSNPDGFVIRIQYNGIDNLLEALNEKNNRGYWDDVWSEAGSTGTTGTSERIVGTSFKVIMETEEQVEISFSRIWDPSLKGKQSALNIDKRYVMLRNSSGLYSYAIFEHLKEWPAFNIPQIRIVYKLRKDKFHYMAVADNRQRLMPLPDDRLPERGEELIPPEAVLLVNPIEPEFAGEVDDKYQYSSENIDLKVHGWISTKSETNPATGFWVIIPSNEFRSGGLVKQNLTSHVGPISLSMFLSAHYAVEDIVLKLQPNEPWKKVFGPTFVYLNTLLDGHEDPLELWEDAKYQMNKEVQSWPYDFPASDDFQKSNQRGSVCGTLLVRDRCVSDECIIAQGAYIGLAPPGDVGSWQRECKGYQFWTKADEEGYFSINNIRSGDYNLYAWVPGFIGEYWNNEILKITPGCEIDLGDIIYEPPRDGPTLWEIGIPDRSAAEFYVPDPNPKFINKLYIDHPDKFRQYGLWERYAELYPNEDLVYTVGISDYTTDWFYAQVTRKKNDGSYQGTTWQIKFNLDDVEANGIYKLRLALASANVSELQVRVNDVKQDPPLFTTGVIGKDNAIARHGIHGLYWLFNIDVSSILLSKGDNTIFLTQTMATGPLARFQGIMYDYIRLESPNSDSFIKKI 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03531 651 Pfam Polysaccharide lyase family 4, domain III 448 639 IPR029411 -
Trre9g03531 651 SUPERFAMILY Starch-binding domain-like 382 426 IPR013784 GO:0030246
Trre9g03531 651 Coils Coil 552 572 - -
Trre9g03531 651 SUPERFAMILY Galactose-binding domain-like 445 640 IPR008979 -
Trre9g03531 651 Pfam Polysaccharide lyase family 4, domain II 362 434 IPR029413 -
Trre9g03531 651 CDD RGL4_C 450 640 - -
Trre9g03531 651 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 10 643 - -
Trre9g03531 651 FunFam Rhamnogalacturonate lyase B 336 435 - -
Trre9g03531 651 CDD RGL4_N 8 298 - -
Trre9g03531 651 Pfam Rhamnogalacturonate lyase family 6 203 IPR010325 -
Trre9g03531 651 CDD RGL4_M 339 438 IPR029413 -
Trre9g03531 651 Gene3D - 446 640 - -
Trre9g03531 651 Gene3D - 5 280 IPR014718 GO:0030246
Trre9g03531 651 Gene3D - 336 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03531 Trre-Chr9 44053353 44059954 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03531 1 643 Polysaccharide Lyase AT1G09890 64.075 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03531 K18195 - gmx:100815677 1136.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03531 9 44053353 44059954 Trre9g03531 9 44053353 44059954 ECH