Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03512 ATGGCTAGAATCCAAAGAAAGCTCTTCCCAACAGAAACTACCACAAACCAAACATTAGATTGTTATGGCTTTTGTGACCCTTCATGTCCTTCAAATTGTTACACTAATACAAATTACTATTTCACACCCCCACCACTAGAACACACAACACAAATTAACCATGTTTCCTCCTACTTCATCATCCTCATTTCATTATTCTCATTGATTTTTATCATCATTGGTTTTTATGTGATCAAAGTGAAATGCTATAATGAAATGTGTGGTTGGAGAATCAATAACTCTATTCGCTCACAAACCGAAATATCCGAAGATTTTCTCAATGAAAATCAGGTTGGTCACAATCATGATCACAATCACGATCACCCCGTGTGGCTCATTGCTACAGTTGGTTTGCAACAATCGATTATAAATTCGATTACGGTTTCCAAGTATAGAAAAAATGAAGGGTTAATTGAAGCAACAGAATGTTCTGTTTGTTTGAATGAATTTCATGAAGATGAAACTTTAAGATTATTGCCAAAGTGTAGTCATGCTTTTCACATATCATGTATTGATACTTGGTTGAGATCTCATACTAACTGTCCTCTTTGTCGAGCCAGTATTGTTTCCAACAATGTTACTCCTGAAGTAACCGTATCGAATTCGGAACAAGAAAATAACAACTTGGGAAGAAATCAAGATACTCAGATGGACAATCCAAGGAATGATCAACAAGATGTGGTAAGCAACAATATTGTTATCAATGTGGCAATTGAAAACAGGGTTGGAACAATGAGAGAATTAAGTAATGAATCAAATTACAAGGAGCAAATTATGAATGATGAGATGAAAATTGAGGAGGGTTCTGTTTCAACTGATCCTAGAAGGCATAATCATGAAGTTATTCTTTGGAAGGTTATTGCTCAAAAAAATAGTAAAACAATGCGTCGGTGTTCAATTGAAGAGCGTTTGCATGTAAGGCCAGTAGCTATGAAAAAGTCTTTCACTCTACATGGAAGGAAGAGTTTTAAAACAAGATATGTGACTACAATTAAAGACTAA 1041 0.3497 MARIQRKLFPTETTTNQTLDCYGFCDPSCPSNCYTNTNYYFTPPPLEHTTQINHVSSYFIILISLFSLIFIIIGFYVIKVKCYNEMCGWRINNSIRSQTEISEDFLNENQVGHNHDHNHDHPVWLIATVGLQQSIINSITVSKYRKNEGLIEATECSVCLNEFHEDETLRLLPKCSHAFHISCIDTWLRSHTNCPLCRASIVSNNVTPEVTVSNSEQENNNLGRNQDTQMDNPRNDQQDVVSNNIVINVAIENRVGTMRELSNESNYKEQIMNDEMKIEEGSVSTDPRRHNHEVILWKVIAQKNSKTMRRCSIEERLHVRPVAMKKSFTLHGRKSFKTRYVTTIKD 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03512 346 ProSiteProfiles Zinc finger RING-type profile. 156 198 IPR001841 -
Trre9g03512 346 SUPERFAMILY RING/U-box 155 204 - -
Trre9g03512 346 SMART ring_2 156 197 IPR001841 -
Trre9g03512 346 Pfam Ring finger domain 155 198 IPR001841 -
Trre9g03512 346 PANTHER RING-H2 FINGER PROTEIN ATL16 41 293 IPR044600 GO:0016567|GO:0016740
Trre9g03512 346 CDD RING-H2_EL5-like 155 198 - -
Trre9g03512 346 SMART FANCL_C_2 152 205 - -
Trre9g03512 346 FunFam RING-H2 finger protein ATL54 131 204 - -
Trre9g03512 346 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 131 207 IPR013083 -
Trre9g03512 346 MobiDBLite consensus disorder prediction 209 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03512 Trre-Chr9 43892705 43893745 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03512 1 271 C3H Transcription Factor Family AT1G72220 39.803 4.30e-58 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03512 - - mtr:11433251 547.74