Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03503 ATGGGTGGTGCACCTTCTTTCAACCCATTCAGCATCACATTTTTCCCCTTCTTCCCCATCATCATCGTCACCATCACCACCACGCTCATTCTAATCGCAAGTGCGGAAGATCACAATTCAAAAGAAAATGGAACAATTCATAGTCTCAGAGATGACGTCGATGGCGTTGTGGCATCATCACCACCTCCTATATCATCAACGGATAGCTCATCCGGTCACGTGGCGAGGAAATTAGTTACATTTAAACCTAGCACAGCAGTGATAGTAGGTGTTTTAACAACCACATTTTCCCTTGCATTGCTACTCCTTCTATACGCCAAACATTGTAATAGTGGAAATGTATTTGCAGCTAGCAACGCAAATCTTGATGGGGAATCACGTTTGCACGAGAGAAAGAACTCCGGGATTGAGCGTACTATTGTGGAATCATTGCCGGTATTCAAGTTTGAGTCATTGACAGGCCAAAAATATGGACTCGAATGTGCGGTTTGTCTCAACGGGTTTGAGGATCCCGAGGTACTTAGGTTATTGCCAAAATGCAAGCATGCTTTCCACATGGAATGTGTTGACACGTGGCTTGACGAACATTCCACGTGCCCACTTTGTCGTTATAAGGTGGATCCTAATGATATCGATCTTCCTCTGCAACAAAATGTAGAGGAAGATCAATTGTCATCATCAAACATCGAGAATGGAAGAGTTATTAATAATATAAACGACAATGCGTCACAACAAGAAAATGAAAATGTGGGTTCACAACATGTTGTGGAGAATAGTGGAACGTCCTGTAAGATTGAGTTATACTCAAATCAAATTTCTAGTAGTAGTAATTCTAAAAATAATGTAATGAGCCAGGATGTCACTGGAGAGCATAGATTAGATCACCGTATAATTTTGTCGCCTGCTTGTTCTTATACTTCACGCATTGGGGTCCAACAACGATGGAGCAATTTTGAATCAAGTGATATGCTTTATCTAAACTCCGATAGGATCATTAGTGATAATTCCTCTTCACAGTTGAATACCTTGCATGGGGGAAGGAGGACGGTGGTGGAGCATAATCGCAATCTTCTTGATGATGAGATGGAGAATGGTTTTGGTGGTGGTGGGAGGGGTGAGAGGAATTTGAGGACCGTCTCAGAGAGGGTAGGGATGAGTAGATTTTTTAGTAGGGAGAGATGGAGGGAAAGAGAGCATGGTAGTAGGGAAGAACAAGCGCGAGAACGTGAGAGAGTGACTTCGAGGTGGTTGCCTTGGATTTCTGGGTCAAAAACACACTGA 1281 0.4286 MGGAPSFNPFSITFFPFFPIIIVTITTTLILIASAEDHNSKENGTIHSLRDDVDGVVASSPPPISSTDSSSGHVARKLVTFKPSTAVIVGVLTTTFSLALLLLLYAKHCNSGNVFAASNANLDGESRLHERKNSGIERTIVESLPVFKFESLTGQKYGLECAVCLNGFEDPEVLRLLPKCKHAFHMECVDTWLDEHSTCPLCRYKVDPNDIDLPLQQNVEEDQLSSSNIENGRVINNINDNASQQENENVGSQHVVENSGTSCKIELYSNQISSSSNSKNNVMSQDVTGEHRLDHRIILSPACSYTSRIGVQQRWSNFESSDMLYLNSDRIISDNSSSQLNTLHGGRRTVVEHNRNLLDDEMENGFGGGGRGERNLRTVSERVGMSRFFSRERWREREHGSREEQARERERVTSRWLPWISGSKTH 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03503 426 Pfam Ring finger domain 160 203 IPR001841 -
Trre9g03503 426 SUPERFAMILY RING/U-box 141 209 - -
Trre9g03503 426 FunFam RING-H2 finger protein ATL43 136 210 - -
Trre9g03503 426 SMART ring_2 161 202 IPR001841 -
Trre9g03503 426 ProSiteProfiles Zinc finger RING-type profile. 161 203 IPR001841 -
Trre9g03503 426 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 136 211 IPR013083 -
Trre9g03503 426 CDD RING-H2_EL5-like 160 203 - -
Trre9g03503 426 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 63 418 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03503 Trre-Chr9 43836106 43837386 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03503 80 419 C3H Transcription Factor Family AT5G05810 36.990 1.76e-52 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03503 K19041 - mtr:11437137 447.973