Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03501 ATGAAGGGCATAATTGCAAGGTATAATCAGCACTCCCAACAAATCAACAAATTGGACGAACCCTTGCAACTGCAGGCAGAGACAAGCATGTCAGCTGAATTGCATAAGGAAGTTGTGGATAAAACTCAACAACTAAGGGGAATGAAAGGTGAAGATTTTGAAGGGTTAAATTTAGAGGGGCTGCAACAATTGGAGAAACAACTTGAACTAGGACTCAAGCGTGTGATTCAGATGAAGGAAAAGAGGATTATGAATGAGATTGGCACACTTCAGATACAGGGTGCCAAATTAGAAGAGGAGAACAAGCATTTAAAGCAAAAGATGGCTATGTTCTTTAAGGGAAAAAGTCCTATCTTGGGGGACTTGGATAATACCATGCAGGAAATTGTTTCATCAGAGTCCATGAATAATGTATGCAGCTGCAATAGTGGACCTTCTCTTGAACATGATTCTTCTGACACATCTCTTAAGTTAGGGTAA 480 0.4 MKGIIARYNQHSQQINKLDEPLQLQAETSMSAELHKEVVDKTQQLRGMKGEDFEGLNLEGLQQLEKQLELGLKRVIQMKEKRIMNEIGTLQIQGAKLEEENKHLKQKMAMFFKGKSPILGDLDNTMQEIVSSESMNNVCSCNSGPSLEHDSSDTSLKLG 159
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03501 159 Coils Coil 87 107 - -
Trre9g03501 159 ProSiteProfiles K-box domain profile. 24 114 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g03501 159 Pfam K-box region 31 108 IPR002487 GO:0003700|GO:0005634|GO:0006355
Trre9g03501 159 Coils Coil 61 81 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03501 Trre-Chr9 43814769 43818916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03501 1 159 MADS-box Gene Family AT4G24540 45.062 2.24e-33 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03501 - - rcu:8268411 164.851