Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03494 ATGATGAACGCAACTCGAGCAGAAGCAGAACGATTACTTGGAATCTCAGAAAAACTCTTACAAAACCGAGATCTAGTAGGATCAAAAGAATTCGCAATTTTAGCTCAAGAAACCGAACCTCTTCTAGAAGGTTCCGATCAGATCTTAGCAATCATCGAAGTTCTCAACGCCTCTGAAAAACGCATCAACAACAACCCTGATTGGTACTCCATTCTCCAAATCGATCGTAGATCCGACGACCTCGACCTCATCAAGAAACAGTACCGCCGTCTCGCTCTCCTTCTTCATCCTGACAAAAGCCGATTTCATTTCGCCGATCATGCTTTCAAGCTCGTCGCTGATGCATGGGCTATTCTCTCCGATCCAATTAAGAAATCTCATTACGATAAAGATCTATCGTTTTTTGCTCGTGTTGATTTATCGGTTCCTAGTTGGGTTCAACAAGATAAGTTACCGGTTCGAAGAACCGGTCCTGGTCCTGGAAATGGGTCTGGTGTTGGACCTGGACCGGGTACCGGTCCACGGAACAGTGCTGCTTCAGCTAGAGATGAAATAGCGGCTGATGTTCGTAGGAACGCTACGTTTTGGACAGCGTGTCCTTACTGTTACCGTTTGTATGAGTACCCTAAGATTTACGAGGGTTATTGTTTGAAATGTGCTCATTGTGAGAGATCTTTTCACGGTGTTAATGTTCCGTCTTTGCCGCCGTTAGTTCCAGGGCAAGAAGCTTATTATTGTTGTTGGGGTTTTTTCCCTATGGGGTTTGTGCATGGTGGTTCTGTTGAGAAAGAGCCTGAGATTGTGCCGGATGAACCTGCTCCTGTGCCGATATCTGTTCAGCCGACTTCTTCGCTTCCGAATTGGATGCCGGCGCCTGTACCTGTGGAGAATGGTGGGAATAATGTAATGCCGGTGGCACCGGTGTCAGCTACGGTTACTACGCCGGCGAGGGTGACAACAAGGTCGGGTGTTGTTGTTACTGGTGGTGTTGCGAATGGTGTTCCTGGTTCGGGATCAGGTCCGAAGAAGCGGGGAAGGCCAAGGAAGTATTATTAA 1056 0.4744 MMNATRAEAERLLGISEKLLQNRDLVGSKEFAILAQETEPLLEGSDQILAIIEVLNASEKRINNNPDWYSILQIDRRSDDLDLIKKQYRRLALLLHPDKSRFHFADHAFKLVADAWAILSDPIKKSHYDKDLSFFARVDLSVPSWVQQDKLPVRRTGPGPGNGSGVGPGPGTGPRNSAASARDEIAADVRRNATFWTACPYCYRLYEYPKIYEGYCLKCAHCERSFHGVNVPSLPPLVPGQEAYYCCWGFFPMGFVHGGSVEKEPEIVPDEPAPVPISVQPTSSLPNWMPAPVPVENGGNNVMPVAPVSATVTTPARVTTRSGVVVTGGVANGVPGSGSGPKKRGRPRKYY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03494 351 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 2 297 - -
Trre9g03494 351 ProSitePatterns Nt-dnaJ domain signature. 109 128 IPR018253 -
Trre9g03494 351 SUPERFAMILY Chaperone J-domain 62 132 IPR036869 -
Trre9g03494 351 SMART dnaj_3 66 124 IPR001623 -
Trre9g03494 351 ProSiteProfiles dnaJ domain profile. 67 132 IPR001623 -
Trre9g03494 351 MobiDBLite consensus disorder prediction 329 351 - -
Trre9g03494 351 Gene3D DnaJ domain 53 139 IPR036869 -
Trre9g03494 351 PRINTS DnaJ domain signature 69 87 IPR001623 -
Trre9g03494 351 PRINTS DnaJ domain signature 88 103 IPR001623 -
Trre9g03494 351 PRINTS DnaJ domain signature 104 124 IPR001623 -
Trre9g03494 351 Pfam DnaJ domain 67 129 IPR001623 -
Trre9g03494 351 CDD DnaJ 67 121 IPR001623 -
Trre9g03494 351 MobiDBLite consensus disorder prediction 151 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03494 Trre-Chr9 43746842 43747897 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03494 3 348 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 46.875 7.67e-99 295
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03494 - - cam:101502408 570.081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03494 9 43746842 43747897 Trre9g03494 9 43746842 43747897 ECH
Trre9g03494 9 43746842 43747897 Trre5g04569 5 47586204 47586920 PCT