Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03486 ATGTTCTCAAACTTTCAACAACAACAACATAACCTTTTCCAACCCTCTCATGAATGCCAAACATCAGAAGAAGATGAAACCCGAAGCAGCTGTGGCCCAAGCCCAATAACAGCCCACAAACCTTTCTCCTTAAGTGGAGACGGTTCCACTATTGAGATTGATCGTAGGCCAAGAGGCCGTCCACCTGGCTCCAAAAACAAGCCCAAAGCCCAAATCATTATAAATCGCCAGCCCGAGCCCGCGATGAGCCCACACATTCTTGAAATCCCTGAAGGCAGTGATGTCGTTGAAGCAATAGCCCGGTTCAGTAACCGAAGAAAAACCGGTTTATGTATATTAACCGGTTCAGGTACTGTGACTAACGTTACACTCCGTCAAATATCTGCTCCTCCTGGCACCACCGTTACTTTTCACGGCCGTTTTAACATTCTCTCAATCTCCGCCACGTTCTTCTCCCCGTCGGAACCATCACCGCCGATCCAAAAAGAATTCTCGATCTCTCTCGCCGGACCTCAGGGTCAGATTGTCGGAGGGTTTGTCGTTGGACGGTTGCTTGCCGTCAGTGCTGTGTTTGTGATTGCCGCTTCTTTTAACAATCCATCTTATCATAGGTTGCCTTTGGAAGAGGATGTTATGAATAACTCAGTCTCCGGTGGTGGTGGTGGTGGTGGTGAGAAGTCCCCACCGCTTCACACCGGCGGTGGGGAGTCGTGTATGTATAGCTCTCAACTACCTTCTGATGTGAATTGGGCTACAACGCCAAGAACACATTTCTGA 777 0.4891 MFSNFQQQQHNLFQPSHECQTSEEDETRSSCGPSPITAHKPFSLSGDGSTIEIDRRPRGRPPGSKNKPKAQIIINRQPEPAMSPHILEIPEGSDVVEAIARFSNRRKTGLCILTGSGTVTNVTLRQISAPPGTTVTFHGRFNILSISATFFSPSEPSPPIQKEFSISLAGPQGQIVGGFVVGRLLAVSAVFVIAASFNNPSYHRLPLEEDVMNNSVSGGGGGGGEKSPPLHTGGGESCMYSSQLPSDVNWATTPRTHF 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03486 258 ProSiteProfiles PPC domain profile profile. 79 218 IPR005175 -
Trre9g03486 258 SUPERFAMILY AF0104/ALDC/Ptd012-like 81 209 - -
Trre9g03486 258 MobiDBLite consensus disorder prediction 213 240 - -
Trre9g03486 258 FunFam AT-hook motif nuclear-localized protein 83 216 - -
Trre9g03486 258 PIRSF ESCAROLA 2 253 IPR014476 GO:0003680
Trre9g03486 258 MobiDBLite consensus disorder prediction 1 70 - -
Trre9g03486 258 Pfam Plants and Prokaryotes Conserved (PCC) domain 84 199 IPR005175 -
Trre9g03486 258 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 21 229 IPR014476 GO:0003680
Trre9g03486 258 MobiDBLite consensus disorder prediction 1 18 - -
Trre9g03486 258 Gene3D - 84 215 - -
Trre9g03486 258 CDD DUF296 84 194 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03486 Trre-Chr9 43706475 43707251 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03486 47 255 AT-hook Motif Nuclear Localized (AHL) Family AT5G49700 55.804 3.88e-77 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03486 - - cam:101500910 358.992
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03486 9 43706475 43707251 Trre9g03486 9 43706475 43707251 ECH