Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03477 ATGATGTGGGAATGGGAAGATGATGAACCACAACAAAACCAATTTCACGACAACAACAACAACACTTCCCATAAACCCGACCAAATACCCGACCCAAATTCCTATCTCAATTTCGATTTTTTCTCTGCTCTCTCTAAACCCAAGGATTATTACAAGATATTGGAAGTGGATTACGATGCAAACGAGGATACTATTCGCTCTAATTACATTCGTCTTGCTTTGAAATGGCACCCGGATAAACAGAAAGACCAGGATTCTGCCACGTCACGATTTCAAGATATAAACGAGGCTTATCAGGTTTTGAGCGATCCAGACAAAAGGAGGGAGTATGACATAAACGGGATGCGTTACGTATATGACTACAATATCATTGATTATCTTAACCGTTACAAGGGCCTTATATTAACTTGCAATGGCCTTGGCTTAAAGCATTCAATATGGTAA 444 0.3964 MMWEWEDDEPQQNQFHDNNNNTSHKPDQIPDPNSYLNFDFFSALSKPKDYYKILEVDYDANEDTIRSNYIRLALKWHPDKQKDQDSATSRFQDINEAYQVLSDPDKRREYDINGMRYVYDYNIIDYLNRYKGLILTCNGLGLKHSIW 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03477 147 ProSitePatterns Nt-dnaJ domain signature. 91 110 IPR018253 -
Trre9g03477 147 FunFam Chaperone protein DNAj, putative 41 128 - -
Trre9g03477 147 PRINTS DnaJ domain signature 69 84 IPR001623 -
Trre9g03477 147 PRINTS DnaJ domain signature 51 69 IPR001623 -
Trre9g03477 147 PRINTS DnaJ domain signature 86 106 IPR001623 -
Trre9g03477 147 MobiDBLite consensus disorder prediction 1 29 - -
Trre9g03477 147 ProSiteProfiles dnaJ domain profile. 49 114 IPR001623 -
Trre9g03477 147 PANTHER CHAPERONE DNAJ-DOMAIN SUPERFAMILY PROTEIN 7 147 - -
Trre9g03477 147 SMART dnaj_3 48 106 IPR001623 -
Trre9g03477 147 CDD DnaJ 49 103 IPR001623 -
Trre9g03477 147 Gene3D DnaJ domain 41 125 IPR036869 -
Trre9g03477 147 MobiDBLite consensus disorder prediction 14 29 - -
Trre9g03477 147 Pfam DnaJ domain 49 111 IPR001623 -
Trre9g03477 147 SUPERFAMILY Chaperone J-domain 45 133 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03477 Trre-Chr9 43599449 43601664 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03477 42 111 C2H2 Transcription Factor Family AT1G74250 41.333 3.72e-11 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03477 - - gmx:100804409 237.269
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03477 9 43599449 43601664 Trre9g03477 9 43599449 43601664 ECH