Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03475 ATGGCACCACCAAGTTTTGATTTTGCAAATCTGTTTTGCAATGAAGACAGCATTATTTTTGATGAAAATGACTTTGAGGGTCCAAATTCACTTGATACGTTGGATGAATCATGGAGAGATGAATGTGATCCATATCTTAATCTAATTCCTCAATTTGATGAATCAACTCATCAGCAATTTGTTGAACCAATTGTGTTGGTTCCACCACCATTGTTGAGTGATGAGAGTTTGAAGGATTTGGTTGCAAAAGAATGTCATCACTTGCCTGCTAGTGATTATGTCAATAGGCTCAAATATGGTGATTTGGATTTGCAGGGTAGAATGGAAGCCGTTGAATGGATTGAAAAGGTTGCAATGCATTTTGGTTTTGGACCTCTTTGTTTGTACCTAGCTGTAAGCTTCATGGATCGCTTCCTTTCTGTAGTTGAAATGCGGGAGGAAAGAACTTGGACAATTCAACTCTTGGCTGTGGGTTGCTTGTATCTGGCGGCCAAAATCGATGAAACTGATGTTCCTCAAAATGCTGATATGCAGATGAAAGAAAAGAATTATTTTTTTGATAACAAAGCAATGCTGAATATGGAGCTTATGGTGCTAAGCAAATTGAAGTGGAGAATGCAAGGAATTACACCTTTCTCCTACATTGACTATTTCCTTAACAAGGTTAATGGTGATCAAGTTTCAATAGGAGATTCAGTGTTGCAATCTTTCCAACTCATACTGAGCACTGTAAGAGGAATTGACTTCATTCAATTCAGACCATCAGAAATTGCAGCAGCTGTTGCAGTGACATTATCTGTGAAGGATGAAAATCAAACTGTTCAAACTGAGAAAGCAGTTTCTCTTCTGATTGAATACGTAGAAAAGGAGAAAGTAATGAAGTGTATTGAAATGATTCAACAGCTATCTTCAAGCCGTATTGATTCTGCAAATGCTTCTTCTGAATATTTCTCTCATGTGTCTCAAAATCCAATAGATGTTTTGGAAGATCTATGTCTCAACTACAAAAGTGATGACGACGACGACAACAACAAAAATGCCACTTCACCACAAGCAAATTCTGCACACAATAGTCCTGATGCCAAACGCAAGAAGCTTAACATATAA 1107 0.3758 MAPPSFDFANLFCNEDSIIFDENDFEGPNSLDTLDESWRDECDPYLNLIPQFDESTHQQFVEPIVLVPPPLLSDESLKDLVAKECHHLPASDYVNRLKYGDLDLQGRMEAVEWIEKVAMHFGFGPLCLYLAVSFMDRFLSVVEMREERTWTIQLLAVGCLYLAAKIDETDVPQNADMQMKEKNYFFDNKAMLNMELMVLSKLKWRMQGITPFSYIDYFLNKVNGDQVSIGDSVLQSFQLILSTVRGIDFIQFRPSEIAAAVAVTLSVKDENQTVQTEKAVSLLIEYVEKEKVMKCIEMIQQLSSSRIDSANASSEYFSHVSQNPIDVLEDLCLNYKSDDDDDNNKNATSPQANSAHNSPDAKRKKLNI 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03475 368 CDD CYCLIN_AtCycD-like_rpt1 107 204 - -
Trre9g03475 368 ProSitePatterns Cyclins signature. 107 138 IPR006671 -
Trre9g03475 368 MobiDBLite consensus disorder prediction 338 368 - -
Trre9g03475 368 Pfam Cyclin, C-terminal domain 209 306 IPR004367 -
Trre9g03475 368 SUPERFAMILY Cyclin-like 71 206 IPR036915 -
Trre9g03475 368 SMART cyclin_7 112 200 IPR013763 -
Trre9g03475 368 PANTHER CYCLINS 79 303 IPR039361 -
Trre9g03475 368 Gene3D - 77 298 - -
Trre9g03475 368 Pfam Cyclin, N-terminal domain 78 206 IPR006671 -
Trre9g03475 368 SMART Cyclin_C_2 209 331 IPR004367 -
Trre9g03475 368 CDD CYCLIN_AtCycD-like_rpt2 209 299 - -
Trre9g03475 368 FunFam D6-type cyclin 90 207 - -
Trre9g03475 368 Gene3D - 90 207 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03475 Trre-Chr9 43576248 43579938 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03475 74 339 Core Cell Cycle Gene Families AT2G22490 40.221 6.52e-66 211
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03475 K18810 - tpra:123922384 580.482
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03475 9 43576248 43579938 Trre9g03475 9 43576248 43579938 ECH