Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g03462 | ATGGAATTTGACGAGCAAGAGGAACAAGAAGAGGAGATGGAGATTCCAGAAACACAAACGCCGGTGGCAGCAAGTTATGACTCACGGTCTAAAACCGTCGCCGGAGTTGATGGCCGGAAAGGTACCGGCAACGGAAACAGCGGTGTTTTTTCATCAACGGTGAGGTATCGAGAATGTCAGAAGAATCATGCCGTGAGTTTTGGTGGCCATGCTGTCGACGGTTGTTGCGAGTTTATCGCCGCCGGTGAAGAAAACACACTTGAAGCTGTGATTTGTGCTGCCTGTAACTGTCACCGGAACTTTCACCGTAAAGAGATCGACGGTGAGACAGTTAGTTCATGTCAGCGGCCACAACCACCACATCCGCCGCAACCATACCACCATCAATTTCCATCTTACTATCACCGTGGTCCACCTTCCACCGCCGGTTACCTTCACCACCTTGCAACTCCGGTTGCACATCATAGACCATTAGCTCTCCCCGCTGCGGCATCCGGTGGTGGACTCAGCAGAGAAGAAGATGATATGTCAAACCCTAGCAGCAGTGGAGGAGGTGGTGGCGGTAACGGTGGTGGTGGTGGTGGTGGATCAAGGAAGAGATTCAGAACAAAATTTACTCAAGAACAGAAAGATAAGTTGCTAGCTTTTGCTGAAGAACATGGATGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAAAATTGTGTGAAGAGAAATGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA | 786 | 0.4809 | MEFDEQEEQEEEMEIPETQTPVAASYDSRSKTVAGVDGRKGTGNGNSGVFSSTVRYRECQKNHAVSFGGHAVDGCCEFIAAGEENTLEAVICAACNCHRNFHRKEIDGETVSSCQRPQPPHPPQPYHHQFPSYYHRGPPSTAGYLHHLATPVAHHRPLALPAAASGGGLSREEDDMSNPSSSGGGGGGNGGGGGGGSRKRFRTKFTQEQKDKLLAFAEEHGWRIQKQDEAAIEQFCAENCVKRNVLKVWMHNNKNTLGKKP | 261 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g03462 | 261 | Gene3D | - | 184 | 258 | - | - | |
Trre9g03462 | 261 | MobiDBLite | consensus disorder prediction | 1 | 47 | - | - | |
Trre9g03462 | 261 | MobiDBLite | consensus disorder prediction | 1 | 15 | - | - | |
Trre9g03462 | 261 | SUPERFAMILY | Homeodomain-like | 185 | 259 | IPR009057 | - | |
Trre9g03462 | 261 | ProSiteProfiles | Zinc-finger ZF-HD dimerization-type profile. | 56 | 105 | IPR006456 | - | |
Trre9g03462 | 261 | PANTHER | ZINC-FINGER HOMEODOMAIN PROTEIN 2 | 29 | 257 | - | - | |
Trre9g03462 | 261 | FunFam | Zinc-finger homeodomain protein 2 | 191 | 259 | - | - | |
Trre9g03462 | 261 | MobiDBLite | consensus disorder prediction | 110 | 137 | - | - | |
Trre9g03462 | 261 | Pfam | ZF-HD protein dimerisation region | 54 | 106 | IPR006456 | - | |
Trre9g03462 | 261 | NCBIfam | homeobox domain, ZF-HD class | 198 | 255 | IPR006455 | - | |
Trre9g03462 | 261 | MobiDBLite | consensus disorder prediction | 162 | 200 | - | - | |
Trre9g03462 | 261 | NCBIfam | ZF-HD homeobox protein Cys/His-rich dimerization domain | 55 | 106 | IPR006456 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g03462 | Trre-Chr9 | 43415670 | 43416455 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g03462 | 7 | 257 | ZF-HD Transcription Factor Family | AT4G24660 | 47.431 | 1.48e-63 | 197 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | zf-HD | Trre9g03462 | ZF-HD_dimer | 2e-27 | No_clan |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g03462 | - | - | gmx:100776421 | 312.383 |