Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03462 ATGGAATTTGACGAGCAAGAGGAACAAGAAGAGGAGATGGAGATTCCAGAAACACAAACGCCGGTGGCAGCAAGTTATGACTCACGGTCTAAAACCGTCGCCGGAGTTGATGGCCGGAAAGGTACCGGCAACGGAAACAGCGGTGTTTTTTCATCAACGGTGAGGTATCGAGAATGTCAGAAGAATCATGCCGTGAGTTTTGGTGGCCATGCTGTCGACGGTTGTTGCGAGTTTATCGCCGCCGGTGAAGAAAACACACTTGAAGCTGTGATTTGTGCTGCCTGTAACTGTCACCGGAACTTTCACCGTAAAGAGATCGACGGTGAGACAGTTAGTTCATGTCAGCGGCCACAACCACCACATCCGCCGCAACCATACCACCATCAATTTCCATCTTACTATCACCGTGGTCCACCTTCCACCGCCGGTTACCTTCACCACCTTGCAACTCCGGTTGCACATCATAGACCATTAGCTCTCCCCGCTGCGGCATCCGGTGGTGGACTCAGCAGAGAAGAAGATGATATGTCAAACCCTAGCAGCAGTGGAGGAGGTGGTGGCGGTAACGGTGGTGGTGGTGGTGGTGGATCAAGGAAGAGATTCAGAACAAAATTTACTCAAGAACAGAAAGATAAGTTGCTAGCTTTTGCTGAAGAACATGGATGGAGAATTCAGAAACAAGATGAAGCTGCTATAGAACAGTTTTGTGCTGAAAATTGTGTGAAGAGAAATGTTCTTAAAGTTTGGATGCACAATAACAAGAACACTCTTGGTAAGAAACCCTAA 786 0.4809 MEFDEQEEQEEEMEIPETQTPVAASYDSRSKTVAGVDGRKGTGNGNSGVFSSTVRYRECQKNHAVSFGGHAVDGCCEFIAAGEENTLEAVICAACNCHRNFHRKEIDGETVSSCQRPQPPHPPQPYHHQFPSYYHRGPPSTAGYLHHLATPVAHHRPLALPAAASGGGLSREEDDMSNPSSSGGGGGGNGGGGGGGSRKRFRTKFTQEQKDKLLAFAEEHGWRIQKQDEAAIEQFCAENCVKRNVLKVWMHNNKNTLGKKP 261
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03462 261 Gene3D - 184 258 - -
Trre9g03462 261 MobiDBLite consensus disorder prediction 1 47 - -
Trre9g03462 261 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g03462 261 SUPERFAMILY Homeodomain-like 185 259 IPR009057 -
Trre9g03462 261 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 56 105 IPR006456 -
Trre9g03462 261 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 29 257 - -
Trre9g03462 261 FunFam Zinc-finger homeodomain protein 2 191 259 - -
Trre9g03462 261 MobiDBLite consensus disorder prediction 110 137 - -
Trre9g03462 261 Pfam ZF-HD protein dimerisation region 54 106 IPR006456 -
Trre9g03462 261 NCBIfam homeobox domain, ZF-HD class 198 255 IPR006455 -
Trre9g03462 261 MobiDBLite consensus disorder prediction 162 200 - -
Trre9g03462 261 NCBIfam ZF-HD homeobox protein Cys/His-rich dimerization domain 55 106 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03462 Trre-Chr9 43415670 43416455 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03462 7 257 ZF-HD Transcription Factor Family AT4G24660 47.431 1.48e-63 197
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Trre9g03462 ZF-HD_dimer 2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03462 - - gmx:100776421 312.383