Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03461 ATGTGGAGTGTCTATAAAGGGGACACTGAAGATCAATTAGCATTGTTGGTTCGAGATATTAAGGGAAATACTATCCAAGTTACTGTGATGAACAATGATATTGGGGCATGGAAACCCAAACTGGCTGTAGGGAAGACTTATCAAATGAACAACTTCAGAGTTTTCGAAAATGATTTCGATTACAAAATGACAACACACAAATATCGGCTAACATTGGTTGGTGCTACAAAAATTGAAGAAGCTTTAATCCCTGATATACCGCCAACCAACTTTAACTTCAAGGATTTTTCTGAAATTCATGCTGGGAAATACACTCCAGACTTATTAGTTGATGCTATTGGTGTCATGCATGAATTCCGCAAATGTGTTACTGCATCCACTACAAGGAAAGCTCAAGTTTCATTCACTCTTAAGGATTTAAGGGATACTATTATCGACTGCACTCTTTGGGACTCCCTCTCTGTTGAATTTATGACATCTTACAACCAGCGATCTGATTCAGGCCCCATAGTAATCATCATTAAGCATGCTAGGGTGAAGGAACCTCAAGGTGTGTACCCAATTCAGTTGACTAATGTCTGGAATGGCACCAAGTTGATTTTCGATGCATCAGTTCCTGAGATTAAAACATTTCTGAACAGTTTGCCAGACAACGTGAACTACTTACCACAGACCCCAATTGCTTCTAAGTCCACCCATTTTTACACACAAACCTCTGCTGGGTCGCAACATATTTCTGACGACAATTGGATCAAGGGTGCGCGTATTTTGTCATTGTCCGACATGAAGAAACTTAAAGTGGACACTTACTGTGTTACAACTGTTACAACAAAAAAGGTAAAGGTGTCAAACCATGGATGGTTTTTCAGAGCGTGCCGTGAATGCAATTTAAAGGCAGAGGGCACAGTACCACCTTATATTTGTAAGAAGGGTCACCAAGAAAATGATCCATTGATAAAGTATAAAGTTGATGTTGAGGTTTTTGATGGCGATGAGGCTGCAAAGTTTGTGTTCTGGGACAGTTCGCTTGAAGAATTGCTTGGAATGACTGCATCTACGCTACATGAAAAGCAGTGTCAGATTGGCTGTCCTAATGCTGTAGATTACCCTGATGATCTAGATGACATTATGCACAGGAAATTTGCCTTCCGAGTCAAGTGGCAACCAGGCTGGGGAGGACAGGGGTCTGTTGTCCACTGTAAGGATAGTCCAGAGTTAGTTGCAAAGATACAAGAACATCTTCCTGTTGCAGAGAGTGCTGTCAAAGATATTGAAACTATTGATGAGATCCCTGATGATGTTATCTCCATTACTGATTCACCACAAATCCAGAACTTTACTTCATCTGATATCGAGAAGTTTGCTAAGTTGGATGATGCAATTTTAAGCACACCAAATGTCACCAGTCCTGGAGATACTGACATGTCCGACTCTTCACACAAAACTCCAGCCAAGAGAGTTGCTTCGAAGACTATATCAATTGACCAAACAAATCTTGATGCGCAATTCTCATCCACAAGAGTCACTAAACTCATTAAAAAGGAGATGCCATGA 1554 0.406 MWSVYKGDTEDQLALLVRDIKGNTIQVTVMNNDIGAWKPKLAVGKTYQMNNFRVFENDFDYKMTTHKYRLTLVGATKIEEALIPDIPPTNFNFKDFSEIHAGKYTPDLLVDAIGVMHEFRKCVTASTTRKAQVSFTLKDLRDTIIDCTLWDSLSVEFMTSYNQRSDSGPIVIIIKHARVKEPQGVYPIQLTNVWNGTKLIFDASVPEIKTFLNSLPDNVNYLPQTPIASKSTHFYTQTSAGSQHISDDNWIKGARILSLSDMKKLKVDTYCVTTVTTKKVKVSNHGWFFRACRECNLKAEGTVPPYICKKGHQENDPLIKYKVDVEVFDGDEAAKFVFWDSSLEELLGMTASTLHEKQCQIGCPNAVDYPDDLDDIMHRKFAFRVKWQPGWGGQGSVVHCKDSPELVAKIQEHLPVAESAVKDIETIDEIPDDVISITDSPQIQNFTSSDIEKFAKLDDAILSTPNVTSPGDTDMSDSSHKTPAKRVASKTISIDQTNLDAQFSSTRVTKLIKKEMP 517
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03461 517 SUPERFAMILY Nucleic acid-binding proteins 13 81 IPR012340 -
Trre9g03461 517 Pfam Domain of unknown function DUF223 15 105 IPR003871 -
Trre9g03461 517 SUPERFAMILY Nucleic acid-binding proteins 90 219 IPR012340 -
Trre9g03461 517 Gene3D - 236 412 IPR012340 -
Trre9g03461 517 MobiDBLite consensus disorder prediction 465 490 - -
Trre9g03461 517 CDD RPA1_DBD_B_like 111 216 - -
Trre9g03461 517 Gene3D - 84 221 IPR012340 -
Trre9g03461 517 SUPERFAMILY Nucleic acid-binding proteins 268 389 IPR012340 -
Trre9g03461 517 PANTHER OS03G0429900 PROTEIN 131 489 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Trre9g03461 517 Gene3D - 2 81 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03461 Trre-Chr9 43406755 43409381 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03461 19 385 Core DNA Replication Machinery Family AT5G08020 23.545 4.34e-10 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03461 - - tpra:123884216 647.506