Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03445 ATGTCTTTGTTGAAAGATGGTATAGAAATTGTTGAAGTTATTCCAGCTACAGAGAAAAAGAAACAAGGAAGAAAGAGTAATGCGAAGAAGAAGAAGGAAGCGTTAAGGAAAATGTTGGAGAATGATGAAGATGATGATGATGGTAATGGTGATTACGTGGCAGTGACTGACATGGTAGAAAAGGAAGTGCAGAAAAAGAAGAAGGTTAATCGTGGTAGGAAGAGAAAGATTATTTTTGATGAAAATGTTGCTGTGAAAGAGAAGAAGAAAGATAATCATGGTAGAAAAAGGAAGATTATTCTTGATGATGTTTCTGAAGATGAAGAAAATGGTGGTTTTGTTAAGAAAAAGAAGGAACTTTGTGGAAGAAAGAGAAATAAAACATATGTCATAAAGAGTGTTGGAAAAATGAAACATGATTGTATTTATGAGGAGGAAACCAAGATTAATGATGATGATGATGATGATAATGTTGTGGTGTTGAAGTATATGCTGGAATATCTTCTTCCATATTTAAGACAAATGGATCTACAACAAATGGAAGAGAAAGATATAGAAGCCAACATTCAAGGGCTCTCACTCTCTGAGATAAACATTAAGGTGGCAGATTGCTCTAAAGATGACACTGCATACTGTGACAACTGCCAAACGTCGATATTTGACTACCACAGAAGCTGTACAAAATGCTCGTTTGACCTTTGTCTCAACTGTTGTTGGGAGCTTCGTCATGGGAAGCTTCTAGGTGGCGCAGATCCAATTGAGCTTGAGTTTATCAACCGAGGGCGAGATTATCTCCATGGTGGAAATGAAGAGACAATAATCAGAGAAACTGAATCTCATGCTGCCGTCCCACCTCATAAATGGTCAAAATCGGGGTGGCATGCAGAAAGCGATGGCAACATTGCCTGTCCGAAAGCCGATAATGAACGTGATCATGGTTTCCTTGAGCTGAAAAGCATGCTTCCGCCAAATTGCGTCTCTGAGTTAGTATGTAAAGCAACACAACTGAAAGAAACAATTAAACTTAAAGATGCAGAAGAGACTCTTGATAATAGCTGCTCTTGTTTGAAGTCTGTTACGAACAATGCAGATGATATACCCGATAACACAAGGAAGGCAGCTTTTCGTGAACATTCCGATGACAATTTTTTATACTGTCCTAAGGCTGTAGATCTACATAATCATGAGAACGATTTAAGACATTTTCAATGGCACTGGAGAAAAGGGGAGCCGGTAATTGTCAGCAATGTTCTTGAATCATGTACATCTGGTTTAAGCTGGGAACCACATGTCATATGGCGTGCTTTTCATCAGATAAGTGATACCGATCACAACTCATTTTTTAATGTGAAGGCAATTGATTGCTTAGATTGGTGCGAGGGAAGTTTTAATGCGCACCATTTCTTTACTGGGTACACAAATGGTCGTAAGAATCAGCTTGATTGGCCTCAGTTATTGAAATTGAAAGATTGGGCTCTTAATTTATCCGAGGAACAATTGCCTAATCATTGTGCCGAGTTCATATCTTCCTTGCCGTATAAAGAATATACAGATCCTTTCGAAGGCGCTCTTAACCTTGCTGTGAAGCTTCCAGATAATGTTCACATGAGACCATATATTGCTTATGGATTTGCTCAGGAGCTTGGACGGGGTGATTCTGTGACTAAGCTCCATTGTAATATGTCCGGTGTTGTAAATGTGTTGACTCATATTGCTAAAGTGGAACTGGAAACTGCGAGCATTGCGGCAATAAATAAATTGAAACAAAAACACCTTGAGCAAGACAAGAGGGAGCTACATGATGATAATCAGCATGGAGATACCAATGTTGACATGCTTGATGATTCGTCTTCGTCCATAACTGCTTCAAACGAGCAAAATAGTTTAGATGGTGCTCTCTGGGATATTTTTCGGAGAGAGGATGAACCTAAATTGAAGGAATATCTGAACAAGCATTTCAAAGAGTTCAGGCATGTTCATTGCTCTCCTTTAAAGCAGGTAATTCACCCGATCCATGATCAGACCTTTTATCTCACTATCGAGCATAAGAAGAGACTTAAGGAGGAGTATGGAATTGAGCCATGGACTTTTGTTCAGAAGCTAGGAGATGCTGTTTTCATTCCGGCTGGTTGTCCCCACCAAGTCAGAAATCTGAAGTCATGCACCAAGGTTGCACTTGATTTTGTCTCTCCTGAAAATGTTGGTGAGTGCGTCCGTTTGACGGAGGAAATCCGCAAACTTCCGGTAAATCACAGTTCCATAGAGGACAAATTGGAGGTGAAGAAAATGATTATACATGCTATGCGTGATGTCGTCAAAAAGTTGGACAGAGAAAGGGAGCGGCTCACTGAGTTACGCTACCGGTTCATGTGCAATAGGTTAGCTGTTTTTCAATACAAGTGGGAGTTGAAAGTGAGCATGGCTACTGCAAAGGGAAAAAGTGTGCTGCATTTTCCGAAATTTGTCAGCAATGAATGTTCGCTTCATCAGGGTCAACAAATTCATGTAGTTTGTGATGAAACTAAAGAAGCAACCTGCTGTGATGTTATGAAGAATGACAGAAAATCACCTCAATACAATATAGGCCGTGGATGGTATGAGTTTGTTAGAAAGCTGAAACTGAAGAATGGCGATAAGATTGTGTTTACTATCGACAATCCTCCTCGAGTGTTGAATGTTAGGACAGTGAGACACTAA 2697 0.3978 MSLLKDGIEIVEVIPATEKKKQGRKSNAKKKKEALRKMLENDEDDDDGNGDYVAVTDMVEKEVQKKKKVNRGRKRKIIFDENVAVKEKKKDNHGRKRKIILDDVSEDEENGGFVKKKKELCGRKRNKTYVIKSVGKMKHDCIYEEETKINDDDDDDNVVVLKYMLEYLLPYLRQMDLQQMEEKDIEANIQGLSLSEINIKVADCSKDDTAYCDNCQTSIFDYHRSCTKCSFDLCLNCCWELRHGKLLGGADPIELEFINRGRDYLHGGNEETIIRETESHAAVPPHKWSKSGWHAESDGNIACPKADNERDHGFLELKSMLPPNCVSELVCKATQLKETIKLKDAEETLDNSCSCLKSVTNNADDIPDNTRKAAFREHSDDNFLYCPKAVDLHNHENDLRHFQWHWRKGEPVIVSNVLESCTSGLSWEPHVIWRAFHQISDTDHNSFFNVKAIDCLDWCEGSFNAHHFFTGYTNGRKNQLDWPQLLKLKDWALNLSEEQLPNHCAEFISSLPYKEYTDPFEGALNLAVKLPDNVHMRPYIAYGFAQELGRGDSVTKLHCNMSGVVNVLTHIAKVELETASIAAINKLKQKHLEQDKRELHDDNQHGDTNVDMLDDSSSSITASNEQNSLDGALWDIFRREDEPKLKEYLNKHFKEFRHVHCSPLKQVIHPIHDQTFYLTIEHKKRLKEEYGIEPWTFVQKLGDAVFIPAGCPHQVRNLKSCTKVALDFVSPENVGECVRLTEEIRKLPVNHSSIEDKLEVKKMIIHAMRDVVKKLDRERERLTELRYRFMCNRLAVFQYKWELKVSMATAKGKSVLHFPKFVSNECSLHQGQQIHVVCDETKEATCCDVMKNDRKSPQYNIGRGWYEFVRKLKLKNGDKIVFTIDNPPRVLNVRTVRH 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03445 898 Gene3D - 767 898 IPR015300 -
Trre9g03445 898 Gene3D Cupin 384 754 - -
Trre9g03445 898 FunFam Transcription factor jumonji (JmjC) domain-containing protein 569 754 - -
Trre9g03445 898 SUPERFAMILY Clavaminate synthase-like 396 776 - -
Trre9g03445 898 Coils Coil 765 785 - -
Trre9g03445 898 Coils Coil 25 45 - -
Trre9g03445 898 ProSiteProfiles JmjC domain profile. 507 745 IPR003347 -
Trre9g03445 898 SMART cupin_9 500 745 IPR003347 -
Trre9g03445 898 MobiDBLite consensus disorder prediction 610 624 - -
Trre9g03445 898 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 18 779 IPR045109 GO:0032454|GO:0033169
Trre9g03445 898 SUPERFAMILY DNA-binding pseudobarrel domain 809 888 IPR015300 -
Trre9g03445 898 MobiDBLite consensus disorder prediction 18 50 - -
Trre9g03445 898 Pfam JmjC domain, hydroxylase 618 728 IPR003347 -
Trre9g03445 898 MobiDBLite consensus disorder prediction 599 624 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03445 Trre-Chr9 43209773 43215154 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre9g03445 JmjC 2.1e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03445 K15601 - gmx:100805723 777.319