Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03427 ATGATTTTAAAAAATGGTTTCATTAATGTTGCTATCATAGTAACATTATTCATAGCAAATGTTGTATTATCAGATGACACAATTCCAATTCCAGCTGATAGAGAACAATTAGAAACATGGTTCAATACCAATGTTGGTCCATTAGAACAAAGAAAAGATACCCTTAACCCTGAATTGGTTACTGCAGAAGCTGATGCTAAAGTTATTAAAGTAATGCAAGATGGTAGTGGTGATTTCAAAACCATTACTGATGCTATTAATAGCATACCTAATGGTAACACAAAACGTGTGATTATTCATATTGGTCCTGGGAATTATAACGAGAAAATCAAAATTGAAAGGACAAAACCTTTTGTTACATTGTATGGAACACCAGAAAGTATGCCAAATATTACCTTTGGTGGAACTGCAAAAAAATATGGAACAGTTGATAGTGCTACATTGATTGCTGAATCAGATTATTTTGTAGCTGCTAACATCATAATCTCGAATTCTGCACCAAGACCTGATGGAAAAATGAAAGGTGCTCAAGCGGTTGCATTGAGAACTTCTGGTGACAAATCAGCATTTTATAATTGTCAATTCTTTGGATTCCAGGACACAATCTGTGATGATAGACATAATCATTTTTTCAAAGATTGTTTAATTCAAGGCACAGTGGATTACATATTTGGAAGTGGAAGGTCATTATATTTGAAAACTGAATTGAGATCACTTGGTGCCACTGGGCCAACAGTGATAGTGGCACAAGCAAGGAAAAGTGATACAGAGGATTGTTTATATTCATTTGTGCATTGTGATGTCACTGGAACTGGAAATGACACATTCTTAGCTAGATCATGGATGTCTCATCCTAAAGTTGTGTTTGCTTACTCAACTTTGACCGATGTTCTTAATCCAATAGCTTGGAATAACGACTTGCACCCTGAATTTGAAAAAACTTTATACTTTGGAGAATACAAGAACACAGGACCAGGTGCAAATACTAAAGGGCGTGCACCTTTCACAAAGCAACTAAATGAAGCAGAGGTTAAACCTTTCATTACACTTGAAATGATTCAAGCATCTAAATGGCTTCTTCCTCCTCCAAAAGTCTAA 1098 0.3534 MILKNGFINVAIIVTLFIANVVLSDDTIPIPADREQLETWFNTNVGPLEQRKDTLNPELVTAEADAKVIKVMQDGSGDFKTITDAINSIPNGNTKRVIIHIGPGNYNEKIKIERTKPFVTLYGTPESMPNITFGGTAKKYGTVDSATLIAESDYFVAANIIISNSAPRPDGKMKGAQAVALRTSGDKSAFYNCQFFGFQDTICDDRHNHFFKDCLIQGTVDYIFGSGRSLYLKTELRSLGATGPTVIVAQARKSDTEDCLYSFVHCDVTGTGNDTFLARSWMSHPKVVFAYSTLTDVLNPIAWNNDLHPEFEKTLYFGEYKNTGPGANTKGRAPFTKQLNEAEVKPFITLEMIQASKWLLPPPKV 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03427 365 SUPERFAMILY Pectin lyase-like 65 359 IPR011050 -
Trre9g03427 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 62 359 - -
Trre9g03427 365 Gene3D - 64 361 IPR012334 -
Trre9g03427 365 FunFam Pectinesterase 64 361 - -
Trre9g03427 365 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
Trre9g03427 365 Pfam Pectinesterase 69 354 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03427 Trre-Chr9 42988167 42992739 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03427 6 365 Carbohydrate Esterase AT1G69940 56.198 2.02e-152 432
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03427 K01051 - gmx:100786427 567