Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03425 ATGGTTTCAAAAACAAGAATCACTATCATTAATGTTGCTATCATAGTAACATTATTAACAGCCAATGTTGCATTATCAGATAACACAATTCCAGCTGATAGAGCACAATTAGAAACATGGTTCAGCACCAATTTTGGTCCATTAGAACAAAGAAAAGCTACCCTTGACCCTGCATTGGTTACTGCAGAAGCTACACCTAAAATTATTAAAGTAAATCAAGATGGTAGTGGTGAATTCAAAACCATCACCGATGCTCTTAATAGCATACCTTCCGGTAACACTCAACGTGTGATTCTTAACATCGGCGCTGGAAATTATAACGAAAAAATCAAAGTTGAGAGGACAAAGCCTTTTGTTACATTTTATGGTTCACCAAATAGTATGCCAAATATAACCTATGCTGGTACGGCAGCACAATATGGCACGGTTGATAGCGCTACGGTCATTGTCGAAGGAGATTATTTTGTAGCTGCTAACATTATAATATCGAATTCTGCACCATTACCTGATGGAAAAAGGCCAGGTGCTCAAGCTGTTGCATTGAGAGCTTCTGGTGACAAATCAACATTTTATAGTTGTCAATTCATTGGGTTCCAGGACACAATTTGTGATGACAGACATAATCATTTTTTCAAAGATTGTTTAGTTCAAGGCACAGTGGATTACATATTTGGAAGTGGAAGGTCACTATATTTGAAAAATGAATTGAGATCACTTGGTCACACCGGACCAACTGTGATAGTAGCACAAGCAAGAAAAAGTCCAACAGAAGATACTTTATACTCATTTGTGCATTGTGATGTAACTGGAACTGGACATGATACTTTCTTAGCAAGAGCATGGATGTCGAATCCCGAAGTCGTGTTTGCTTACACAAATCTTACTGATGTTGTTAATCCATTGGCTTGGAATAACAACTTGCACCCTGAATATGACAAAACTATTCATTTCGGAGAATACCAGAACACAGGACCAGGCGCGGATACTAAAGGGCGTGCACCTATGATGAAGCAACTAACTGCAGAAGAGGTTAAACCTTACATTACGATGGATATGATTCAAGCATCTAAATGGCTTCTTCCTCCTCCAAAAATATAA 1098 0.3816 MVSKTRITIINVAIIVTLLTANVALSDNTIPADRAQLETWFSTNFGPLEQRKATLDPALVTAEATPKIIKVNQDGSGEFKTITDALNSIPSGNTQRVILNIGAGNYNEKIKVERTKPFVTFYGSPNSMPNITYAGTAAQYGTVDSATVIVEGDYFVAANIIISNSAPLPDGKRPGAQAVALRASGDKSTFYSCQFIGFQDTICDDRHNHFFKDCLVQGTVDYIFGSGRSLYLKNELRSLGHTGPTVIVAQARKSPTEDTLYSFVHCDVTGTGHDTFLARAWMSNPEVVFAYTNLTDVVNPLAWNNNLHPEYDKTIHFGEYQNTGPGADTKGRAPMMKQLTAEEVKPYITMDMIQASKWLLPPPKI 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03425 365 Gene3D - 63 361 IPR012334 -
Trre9g03425 365 Pfam Pectinesterase 70 354 IPR000070 GO:0030599|GO:0042545
Trre9g03425 365 SUPERFAMILY Pectin lyase-like 64 359 IPR011050 -
Trre9g03425 365 FunFam Pectinesterase 64 361 - -
Trre9g03425 365 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 61 359 - -
Trre9g03425 365 ProSitePatterns Pectinesterase signature 2. 216 225 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03425 Trre-Chr9 42957816 42959416 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03425 11 365 Carbohydrate Esterase AT1G69940 53.889 6.77e-143 407
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03425 K01051 - gmx:100786427 544.273