Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03395 ATGAGTGACAAAGAAAAGTTTGAGGTAGATGGAAATGGGGAGCCTATGAGTTATTCTAATGGTATGCCTCCTGATTGGAGATATGGCGGCGGCGGCGGTGGTGGCAATCTTGTAAATTCATCTCTTGGATTGGTTTCTATTGGGAATTCTATGAATATCAATAGAGACGATTTAATTGGTTCTTCTTCATGTTCTTCTGCCTCAATGGTGGACTCATTTAGTCCTAACTTTTGGGACCATTCAGCAAATTCTCAAAATTTGGGGTTTTGTGATATCAATGGGAGTTCTTCAAGTACAATTGGAATTAGAAAAGACGGGTTTGGTTTCGGAAGAGGTGGTCATGATCATGGTACAATTGAAGTTGGTTGGAACCAAGCTAATTCTATGATGAAAGGGGATGGTTTTTTAATGAATGGTGGACAAGGGGTTTTTCCTCAGAGTTTATCTCAGTTTCCAACTGATTCTGGATTTATTGAAAGGGCTGCGAGGTTCTCGTGTTTCGGTGGAGGGAATTTCGGCGATGTTGTGAACTCGTATGGGATTCCTCAATCTATGGCTATGTATGCTGCTGGCACAATTCATGGAGCTAGAGATGCTCTTGCAGGCATTGGATTGAAAGTTGGAACTGGAGGACAGTCTCAAGAAAGTCATGATCCTATGGTAGTTGAAGGTACGAAAGGCGTGTCTCCGTCTGTTGAGCAATTGGCTACTAGAGGAAGCCCTTTAAAGAATGATAAAAGTGAGAGTCGTGCCGTGTCTCAAGATGACGGGAAGCAAGTTCTTGTTAGGAATGTTAATGATTCCGACAGAGGTGAATCAGGTGACGACGATGGTGGTGTACAGGAAGGTTCCGCGATGATGGAGGGTACTACAAGCGGAGAACCTTCGATTAAAGGACTAAATTCGAAGAAAAGGAAAAGAAATGGACAAGATGCTGATAATGATAAAGACGATGGAGCTCGAGAATTACAAAGTGAAGGTGCAAAGGACAATCCCGAGAATCAACAGAAAGGAGATCAAACCAAGGCTTCTGGAAAGAATGCCAAACAGGCCTCTCAAACTTCTGATCCACCTAAGGAAGAATACATACATGTTAGGGCTCGACGGGGCCAAGCAACAAACAGTCATAGCCTTGCAGAGAGGGTGAGGAGGGAAAAGATAAGCGAGAGAATGAAGTTTCTTCAAGAACTTGTACCCGGATGCAGCAAGGTCACCGGCAAGGCAGTGATGCTGGATGAAATCATCAATTATGTACAGTCACTTCAACGGCAGGTTGAGTTTTTGTCGATGAAACTTGCAACAGTAAATCCACGGATGGATTTGAATATTGAAAGCCTTCTTGCTAAAGATATTCTTCACCAACGGCCTGGTCCTTCATCCACACTAGGGTTTCCTCTAGATATGTCTATGAATTTTCCACCATTACATCCATCTCCACCCGGGATGATTCACTCGGTTATTCCAAACATGACAAACCCGTCCGATATCCTTCGAAGAACTATTCATCCACAGTTAACACCCTTGACTGGAGGATTCAAGGAGCCAAGTCAGATGCCTGATGTATGGGAGGACGAGCTTCATAGTGTTGTACATATGAGCTTTGCAACAACTGCTCCCTCGACTAGCCAAGATGTAGATGGTACTGCGGCAGCAAATCTGATGAAAGTTGAACTTTGA 1677 0.4365 MSDKEKFEVDGNGEPMSYSNGMPPDWRYGGGGGGGNLVNSSLGLVSIGNSMNINRDDLIGSSSCSSASMVDSFSPNFWDHSANSQNLGFCDINGSSSSTIGIRKDGFGFGRGGHDHGTIEVGWNQANSMMKGDGFLMNGGQGVFPQSLSQFPTDSGFIERAARFSCFGGGNFGDVVNSYGIPQSMAMYAAGTIHGARDALAGIGLKVGTGGQSQESHDPMVVEGTKGVSPSVEQLATRGSPLKNDKSESRAVSQDDGKQVLVRNVNDSDRGESGDDDGGVQEGSAMMEGTTSGEPSIKGLNSKKRKRNGQDADNDKDDGARELQSEGAKDNPENQQKGDQTKASGKNAKQASQTSDPPKEEYIHVRARRGQATNSHSLAERVRREKISERMKFLQELVPGCSKVTGKAVMLDEIINYVQSLQRQVEFLSMKLATVNPRMDLNIESLLAKDILHQRPGPSSTLGFPLDMSMNFPPLHPSPPGMIHSVIPNMTNPSDILRRTIHPQLTPLTGGFKEPSQMPDVWEDELHSVVHMSFATTAPSTSQDVDGTAAANLMKVEL 558
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03395 558 MobiDBLite consensus disorder prediction 209 360 - -
Trre9g03395 558 MobiDBLite consensus disorder prediction 337 357 - -
Trre9g03395 558 FunFam Basic helix-loop-helix transcription factor 368 440 - -
Trre9g03395 558 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 250 471 IPR024097 GO:0006355
Trre9g03395 558 SMART finulus 377 427 IPR011598 GO:0046983
Trre9g03395 558 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 369 440 IPR036638 GO:0046983
Trre9g03395 558 MobiDBLite consensus disorder prediction 1 24 - -
Trre9g03395 558 MobiDBLite consensus disorder prediction 262 277 - -
Trre9g03395 558 MobiDBLite consensus disorder prediction 299 336 - -
Trre9g03395 558 CDD bHLH_AtBPE_like 361 446 - -
Trre9g03395 558 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 371 421 IPR011598 GO:0046983
Trre9g03395 558 Gene3D - 368 442 IPR036638 GO:0046983
Trre9g03395 558 Pfam Helix-loop-helix DNA-binding domain 374 422 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03395 Trre-Chr9 42637405 42640137 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03395 56 534 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68920 43.177 3.06e-107 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g03395 HLH 6.2e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03395 - - tpra:123911592 967.222