Gene search


Sequence information


Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03355 ATGAAAGGAGATATAGCTTTGTTTTGTTTAGCTTTGTTCTTCATGTGGACTTCAGTAACTGGTTTACTTTCTTCTAAAGGTGTCAACTATGAAGTTCAAGCTTTGATTGGAATTAAGAATTCTTTGGTGGATCCTCATTCTGCTTTGAATAATTGGGATGCTGAGTCTGTTGATCCTTGTAACTGGGCTATGGTCACTTGTTCTCTTGATCATTCTGTTGTTGTCCTTGGAATTCCAAGCCAGAATATATCTGGTACTCTCTCATCAAGCATAGGTTCCTTACCAAACCTACAAACTGTGCTGCTGCAGGATAATAATATCACAGGACCAATTCCTCCTGAGATTGGAAAGCTTCAAAAGCTTCAAACTCTTGATCTTTCCGACAATTTCTTCACCGGTCAACTTCCAGAATCTCTTTCTCATATGAAGAGTCTTCATTATTTGCGGCTAAACAATAACAGTCTTTCCGGACCAATTCCTTCATCAGTGGCTAACATGTCACAGCTTGCCTTTCTGGATCTTTCTTTTAATAACTTGAGTGGACCTGTACCAAAATTAAATGCTAAAACATTCAATATTGTAGGCAATCCTCAGATATGTGCAACTGAAGTTAAACAAAACTGTTTTAGAACAACATTAATTTCTTCTGTTATGAATAATAACTCTCAAGATTTACAATCCTCTAAGAGACCAAAAAGTCACAAAGCTGCCTTAGCTTTTGCTTCAAGCTTAAGCTGCATCTGCTTACTAATTCTGGGATTCGGCTTCCTTCTCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTCGACACAAATGAACAATACCGCGAAGAGATTTGCCTAGGAAACCTGAAGAAGTTCCATTTCAGAGAACTTCAAGTTGCTACAAATAACTTTAGCAGCAAAAACTTGGTTGGAAAAGGTGGTTTCGGCAATGTTTACAAAGGTTGTCTCCGAGATGGTACGGTTATAGCAGTAAAACGGCTCAAAGATGGTAACGCCGTTGGTGGTGAAATCCAATTCCAAACTGAACTAGAGATGATAAGTTTAGCTGTTCATAGGAATCTTCTTCGCCTGTATGGATTTTGCACGACAGCTACAGAACGGCTCTTGGTTTATCCTTATATGTCAAATGGTAGTGTTGCTTCTCGTCTAAAAGGAAAGCCATCTCTGGATTGGGCTACAAGGAAGAGAATAGCATTAGGAGCGGGACGAGGCTTACTATATTTACATGAACAATGTGATCCAAAGATTATTCATAGAGATGTAAAAGCAGCAAACATCTTACTTGATGATTATTGTGAAGGTGTAGTAGGAGACTTTGGTTTAGCAAAACTATTGGACCACAGAGATTCACATGTGACAACAGCTGTGAGAGGAACTGTAGGACATATAGCTCCTGAGTACCTATCAACAGGACAATCCTCAGAGAAAACAGATGTATTTGGATTTGGAATTCTTCTACTTGAATTGATTTCTGGACAAAGAGCTCTTGAATTTGGGAAATCTGTTAACCAGAAAGGAGCTATGCTTGATTGGGTAAAGAAAATACATCAAGAGAAGAAAATCGACGTGTTAGTTGACAAGGATCTGAAAAACAACTATGACAGGATAGAATTAGATGAAATAGTTCAAGTGGCTCTTTTATGCACTCAGTACCTACCAAGTCACAGACCAAAAATGTCAGAAGTTGTTAGAATGCTTGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCGTCTTCAGAACGTTATTCTGATCTTACCGATGACTCTTCATTGCTTGCACAAGCAATGGAACTTTCTGGACCAAGATAA 1863 0.387 MKGDIALFCLALFFMWTSVTGLLSSKGVNYEVQALIGIKNSLVDPHSALNNWDAESVDPCNWAMVTCSLDHSVVVLGIPSQNISGTLSSSIGSLPNLQTVLLQDNNITGPIPPEIGKLQKLQTLDLSDNFFTGQLPESLSHMKSLHYLRLNNNSLSGPIPSSVANMSQLAFLDLSFNNLSGPVPKLNAKTFNIVGNPQICATEVKQNCFRTTLISSVMNNNSQDLQSSKRPKSHKAALAFASSLSCICLLILGFGFLLWWRQRYNKQIFFDTNEQYREEICLGNLKKFHFRELQVATNNFSSKNLVGKGGFGNVYKGCLRDGTVIAVKRLKDGNAVGGEIQFQTELEMISLAVHRNLLRLYGFCTTATERLLVYPYMSNGSVASRLKGKPSLDWATRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEGVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKSVNQKGAMLDWVKKIHQEKKIDVLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR 620
       

Annotation information


Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03355 620 ProSitePatterns Serine/Threonine protein kinases active-site signature. 419 431 IPR008271 GO:0004672|GO:0006468
Trre9g03355 620 Gene3D Ribonuclease Inhibitor 28 210 IPR032675 -
Trre9g03355 620 FunFam Somatic embryogenesis receptor-like kinase 1 377 589 - -
Trre9g03355 620 MobiDBLite consensus disorder prediction 587 611 - -
Trre9g03355 620 Pfam Protein kinase domain 301 567 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03355 620 FunFam Somatic embryogenesis receptor kinase 1 269 376 - -
Trre9g03355 620 SMART serkin_6 300 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03355 620 ProSiteProfiles Protein kinase domain profile. 300 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03355 620 SUPERFAMILY L domain-like 30 193 - -
Trre9g03355 620 ProSitePatterns Protein kinases ATP-binding region signature. 306 328 IPR017441 GO:0005524
Trre9g03355 620 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 11 580 - -
Trre9g03355 620 MobiDBLite consensus disorder prediction 577 620 - -
Trre9g03355 620 Pfam Leucine rich repeat N-terminal domain 29 68 IPR013210 -
Trre9g03355 620 FunFam Putative LRR receptor-like serine/threonine-protein kinase 28 210 - -
Trre9g03355 620 Gene3D Transferase(Phosphotransferase) domain 1 377 589 - -
Trre9g03355 620 SUPERFAMILY Protein kinase-like (PK-like) 279 570 IPR011009 -
Trre9g03355 620 Pfam Leucine rich repeat 120 179 IPR001611 GO:0005515
Trre9g03355 620 Gene3D Phosphorylase Kinase; domain 1 269 376 - -
       

Duplication type information


Select Gene Chromosome Start End Duplicated_type
Trre9g03355 Trre-Chr9 42234461 42238606 Dispersed/Wgd
       

Functional genes information


Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03355 6 620 Receptor kinase-like Gene Family AT5G16000 71.200 0.0 909
       

Transcription factors information


Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Trre9g03355 Pkinase 4e-42 CL0016
       

Pathway information


Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03355 - - gmx:100790194 1086.25