LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03355	ATGAAAGGAGATATAGCTTTGTTTTGTTTAGCTTTGTTCTTCATGTGGACTTCAGTAACTGGTTTACTTTCTTCTAAAGGTGTCAACTATGAAGTTCAAGCTTTGATTGGAATTAAGAATTCTTTGGTGGATCCTCATTCTGCTTTGAATAATTGGGATGCTGAGTCTGTTGATCCTTGTAACTGGGCTATGGTCACTTGTTCTCTTGATCATTCTGTTGTTGTCCTTGGAATTCCAAGCCAGAATATATCTGGTACTCTCTCATCAAGCATAGGTTCCTTACCAAACCTACAAACTGTGCTGCTGCAGGATAATAATATCACAGGACCAATTCCTCCTGAGATTGGAAAGCTTCAAAAGCTTCAAACTCTTGATCTTTCCGACAATTTCTTCACCGGTCAACTTCCAGAATCTCTTTCTCATATGAAGAGTCTTCATTATTTGCGGCTAAACAATAACAGTCTTTCCGGACCAATTCCTTCATCAGTGGCTAACATGTCACAGCTTGCCTTTCTGGATCTTTCTTTTAATAACTTGAGTGGACCTGTACCAAAATTAAATGCTAAAACATTCAATATTGTAGGCAATCCTCAGATATGTGCAACTGAAGTTAAACAAAACTGTTTTAGAACAACATTAATTTCTTCTGTTATGAATAATAACTCTCAAGATTTACAATCCTCTAAGAGACCAAAAAGTCACAAAGCTGCCTTAGCTTTTGCTTCAAGCTTAAGCTGCATCTGCTTACTAATTCTGGGATTCGGCTTCCTTCTCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTCGACACAAATGAACAATACCGCGAAGAGATTTGCCTAGGAAACCTGAAGAAGTTCCATTTCAGAGAACTTCAAGTTGCTACAAATAACTTTAGCAGCAAAAACTTGGTTGGAAAAGGTGGTTTCGGCAATGTTTACAAAGGTTGTCTCCGAGATGGTACGGTTATAGCAGTAAAACGGCTCAAAGATGGTAACGCCGTTGGTGGTGAAATCCAATTCCAAACTGAACTAGAGATGATAAGTTTAGCTGTTCATAGGAATCTTCTTCGCCTGTATGGATTTTGCACGACAGCTACAGAACGGCTCTTGGTTTATCCTTATATGTCAAATGGTAGTGTTGCTTCTCGTCTAAAAGGAAAGCCATCTCTGGATTGGGCTACAAGGAAGAGAATAGCATTAGGAGCGGGACGAGGCTTACTATATTTACATGAACAATGTGATCCAAAGATTATTCATAGAGATGTAAAAGCAGCAAACATCTTACTTGATGATTATTGTGAAGGTGTAGTAGGAGACTTTGGTTTAGCAAAACTATTGGACCACAGAGATTCACATGTGACAACAGCTGTGAGAGGAACTGTAGGACATATAGCTCCTGAGTACCTATCAACAGGACAATCCTCAGAGAAAACAGATGTATTTGGATTTGGAATTCTTCTACTTGAATTGATTTCTGGACAAAGAGCTCTTGAATTTGGGAAATCTGTTAACCAGAAAGGAGCTATGCTTGATTGGGTAAAGAAAATACATCAAGAGAAGAAAATCGACGTGTTAGTTGACAAGGATCTGAAAAACAACTATGACAGGATAGAATTAGATGAAATAGTTCAAGTGGCTCTTTTATGCACTCAGTACCTACCAAGTCACAGACCAAAAATGTCAGAAGTTGTTAGAATGCTTGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCGTCTTCAGAACGTTATTCTGATCTTACCGATGACTCTTCATTGCTTGCACAAGCAATGGAACTTTCTGGACCAAGATAA	1863	0.387	MKGDIALFCLALFFMWTSVTGLLSSKGVNYEVQALIGIKNSLVDPHSALNNWDAESVDPCNWAMVTCSLDHSVVVLGIPSQNISGTLSSSIGSLPNLQTVLLQDNNITGPIPPEIGKLQKLQTLDLSDNFFTGQLPESLSHMKSLHYLRLNNNSLSGPIPSSVANMSQLAFLDLSFNNLSGPVPKLNAKTFNIVGNPQICATEVKQNCFRTTLISSVMNNNSQDLQSSKRPKSHKAALAFASSLSCICLLILGFGFLLWWRQRYNKQIFFDTNEQYREEICLGNLKKFHFRELQVATNNFSSKNLVGKGGFGNVYKGCLRDGTVIAVKRLKDGNAVGGEIQFQTELEMISLAVHRNLLRLYGFCTTATERLLVYPYMSNGSVASRLKGKPSLDWATRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEGVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKSVNQKGAMLDWVKKIHQEKKIDVLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR	620

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g03355	620	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	419	431	IPR008271	GO:0004672\|GO:0006468
	Trre9g03355	620	Gene3D	Ribonuclease Inhibitor	28	210	IPR032675	-
	Trre9g03355	620	FunFam	Somatic embryogenesis receptor-like kinase 1	377	589	-	-
	Trre9g03355	620	MobiDBLite	consensus disorder prediction	587	611	-	-
	Trre9g03355	620	Pfam	Protein kinase domain	301	567	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g03355	620	FunFam	Somatic embryogenesis receptor kinase 1	269	376	-	-
	Trre9g03355	620	SMART	serkin_6	300	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g03355	620	ProSiteProfiles	Protein kinase domain profile.	300	555	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Trre9g03355	620	SUPERFAMILY	L domain-like	30	193	-	-
	Trre9g03355	620	ProSitePatterns	Protein kinases ATP-binding region signature.	306	328	IPR017441	GO:0005524
	Trre9g03355	620	PANTHER	SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1	11	580	-	-
	Trre9g03355	620	MobiDBLite	consensus disorder prediction	577	620	-	-
	Trre9g03355	620	Pfam	Leucine rich repeat N-terminal domain	29	68	IPR013210	-
	Trre9g03355	620	FunFam	Putative LRR receptor-like serine/threonine-protein kinase	28	210	-	-
	Trre9g03355	620	Gene3D	Transferase(Phosphotransferase) domain 1	377	589	-	-
	Trre9g03355	620	SUPERFAMILY	Protein kinase-like (PK-like)	279	570	IPR011009	-
	Trre9g03355	620	Pfam	Leucine rich repeat	120	179	IPR001611	GO:0005515
	Trre9g03355	620	Gene3D	Phosphorylase Kinase; domain 1	269	376	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03355	Trre-Chr9	42234461	42238606	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03355	6	620	Receptor kinase-like Gene Family	AT5G16000	71.200	0.0	909

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-II	Trre9g03355		Pkinase	4e-42	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03355	-		-	gmx:100790194	1086.25