Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Trre9g03355 | ATGAAAGGAGATATAGCTTTGTTTTGTTTAGCTTTGTTCTTCATGTGGACTTCAGTAACTGGTTTACTTTCTTCTAAAGGTGTCAACTATGAAGTTCAAGCTTTGATTGGAATTAAGAATTCTTTGGTGGATCCTCATTCTGCTTTGAATAATTGGGATGCTGAGTCTGTTGATCCTTGTAACTGGGCTATGGTCACTTGTTCTCTTGATCATTCTGTTGTTGTCCTTGGAATTCCAAGCCAGAATATATCTGGTACTCTCTCATCAAGCATAGGTTCCTTACCAAACCTACAAACTGTGCTGCTGCAGGATAATAATATCACAGGACCAATTCCTCCTGAGATTGGAAAGCTTCAAAAGCTTCAAACTCTTGATCTTTCCGACAATTTCTTCACCGGTCAACTTCCAGAATCTCTTTCTCATATGAAGAGTCTTCATTATTTGCGGCTAAACAATAACAGTCTTTCCGGACCAATTCCTTCATCAGTGGCTAACATGTCACAGCTTGCCTTTCTGGATCTTTCTTTTAATAACTTGAGTGGACCTGTACCAAAATTAAATGCTAAAACATTCAATATTGTAGGCAATCCTCAGATATGTGCAACTGAAGTTAAACAAAACTGTTTTAGAACAACATTAATTTCTTCTGTTATGAATAATAACTCTCAAGATTTACAATCCTCTAAGAGACCAAAAAGTCACAAAGCTGCCTTAGCTTTTGCTTCAAGCTTAAGCTGCATCTGCTTACTAATTCTGGGATTCGGCTTCCTTCTCTGGTGGAGACAAAGATATAACAAGCAAATATTCTTCGACACAAATGAACAATACCGCGAAGAGATTTGCCTAGGAAACCTGAAGAAGTTCCATTTCAGAGAACTTCAAGTTGCTACAAATAACTTTAGCAGCAAAAACTTGGTTGGAAAAGGTGGTTTCGGCAATGTTTACAAAGGTTGTCTCCGAGATGGTACGGTTATAGCAGTAAAACGGCTCAAAGATGGTAACGCCGTTGGTGGTGAAATCCAATTCCAAACTGAACTAGAGATGATAAGTTTAGCTGTTCATAGGAATCTTCTTCGCCTGTATGGATTTTGCACGACAGCTACAGAACGGCTCTTGGTTTATCCTTATATGTCAAATGGTAGTGTTGCTTCTCGTCTAAAAGGAAAGCCATCTCTGGATTGGGCTACAAGGAAGAGAATAGCATTAGGAGCGGGACGAGGCTTACTATATTTACATGAACAATGTGATCCAAAGATTATTCATAGAGATGTAAAAGCAGCAAACATCTTACTTGATGATTATTGTGAAGGTGTAGTAGGAGACTTTGGTTTAGCAAAACTATTGGACCACAGAGATTCACATGTGACAACAGCTGTGAGAGGAACTGTAGGACATATAGCTCCTGAGTACCTATCAACAGGACAATCCTCAGAGAAAACAGATGTATTTGGATTTGGAATTCTTCTACTTGAATTGATTTCTGGACAAAGAGCTCTTGAATTTGGGAAATCTGTTAACCAGAAAGGAGCTATGCTTGATTGGGTAAAGAAAATACATCAAGAGAAGAAAATCGACGTGTTAGTTGACAAGGATCTGAAAAACAACTATGACAGGATAGAATTAGATGAAATAGTTCAAGTGGCTCTTTTATGCACTCAGTACCTACCAAGTCACAGACCAAAAATGTCAGAAGTTGTTAGAATGCTTGAAGGAGACGGACTTGCAGAGAAATGGGAAGCTTCACAGAGAGCTGAATCAACAAGAAGTAGAGGAAATGAACTCTCGTCTTCAGAACGTTATTCTGATCTTACCGATGACTCTTCATTGCTTGCACAAGCAATGGAACTTTCTGGACCAAGATAA | 1863 | 0.387 | MKGDIALFCLALFFMWTSVTGLLSSKGVNYEVQALIGIKNSLVDPHSALNNWDAESVDPCNWAMVTCSLDHSVVVLGIPSQNISGTLSSSIGSLPNLQTVLLQDNNITGPIPPEIGKLQKLQTLDLSDNFFTGQLPESLSHMKSLHYLRLNNNSLSGPIPSSVANMSQLAFLDLSFNNLSGPVPKLNAKTFNIVGNPQICATEVKQNCFRTTLISSVMNNNSQDLQSSKRPKSHKAALAFASSLSCICLLILGFGFLLWWRQRYNKQIFFDTNEQYREEICLGNLKKFHFRELQVATNNFSSKNLVGKGGFGNVYKGCLRDGTVIAVKRLKDGNAVGGEIQFQTELEMISLAVHRNLLRLYGFCTTATERLLVYPYMSNGSVASRLKGKPSLDWATRKRIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEGVVGDFGLAKLLDHRDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELISGQRALEFGKSVNQKGAMLDWVKKIHQEKKIDVLVDKDLKNNYDRIELDEIVQVALLCTQYLPSHRPKMSEVVRMLEGDGLAEKWEASQRAESTRSRGNELSSSERYSDLTDDSSLLAQAMELSGPR | 620 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Trre9g03355 | 620 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 419 | 431 | IPR008271 | GO:0004672|GO:0006468 | |
Trre9g03355 | 620 | Gene3D | Ribonuclease Inhibitor | 28 | 210 | IPR032675 | - | |
Trre9g03355 | 620 | FunFam | Somatic embryogenesis receptor-like kinase 1 | 377 | 589 | - | - | |
Trre9g03355 | 620 | MobiDBLite | consensus disorder prediction | 587 | 611 | - | - | |
Trre9g03355 | 620 | Pfam | Protein kinase domain | 301 | 567 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre9g03355 | 620 | FunFam | Somatic embryogenesis receptor kinase 1 | 269 | 376 | - | - | |
Trre9g03355 | 620 | SMART | serkin_6 | 300 | 555 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre9g03355 | 620 | ProSiteProfiles | Protein kinase domain profile. | 300 | 555 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Trre9g03355 | 620 | SUPERFAMILY | L domain-like | 30 | 193 | - | - | |
Trre9g03355 | 620 | ProSitePatterns | Protein kinases ATP-binding region signature. | 306 | 328 | IPR017441 | GO:0005524 | |
Trre9g03355 | 620 | PANTHER | SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 | 11 | 580 | - | - | |
Trre9g03355 | 620 | MobiDBLite | consensus disorder prediction | 577 | 620 | - | - | |
Trre9g03355 | 620 | Pfam | Leucine rich repeat N-terminal domain | 29 | 68 | IPR013210 | - | |
Trre9g03355 | 620 | FunFam | Putative LRR receptor-like serine/threonine-protein kinase | 28 | 210 | - | - | |
Trre9g03355 | 620 | Gene3D | Transferase(Phosphotransferase) domain 1 | 377 | 589 | - | - | |
Trre9g03355 | 620 | SUPERFAMILY | Protein kinase-like (PK-like) | 279 | 570 | IPR011009 | - | |
Trre9g03355 | 620 | Pfam | Leucine rich repeat | 120 | 179 | IPR001611 | GO:0005515 | |
Trre9g03355 | 620 | Gene3D | Phosphorylase Kinase; domain 1 | 269 | 376 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Trre9g03355 | Trre-Chr9 | 42234461 | 42238606 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Trre9g03355 | 6 | 620 | Receptor kinase-like Gene Family | AT5G16000 | 71.200 | 0.0 | 909 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
PK | RLK-Pelle_LRR-II | Trre9g03355 | Pkinase | 4e-42 | CL0016 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Trre9g03355 | - | - | gmx:100790194 | 1086.25 |