Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03327 ATGTTCCTCTCAAAACAATATTCAAAGCCATACAGAGCAACTATTCCTTCAACAACATATGCAACAAAAAGTGATAATCATATGAATATATTTGGAGGACAGCCACAACCATGGTCAATCAACCATGAACCATTATTTCTTGTCCCTCCAACACCATACACAAGCCTTTTAAATACAAGGGTTCCATCCTCTTCTCATCATCGACATCTATGGATTAATATTTCTGATAATACCTATGGTAGTAAATTGAGTGCTCAAGAAATTATAGAGGCTAAGGCTCTTGCTGCTTCAAAGAGTCACAGTGAAGCTGAAAGGAGACGCAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGTACCATGTTGCCTAACACAACCAAAACAGATAAGGCTTCATTGCTGGCTGAAGTGATTAACCATGTGAAGGAACTGAAACGTCAAATATCGTTAATAGCAGAAACAAGTGAAGTGCCTAGTGAGTCTGATGAGCTAAAAGTGGATGGTAATGATGATGAGAATGGAAACTTTGTGATCAAAGCCTCTTTGTGTTGTGAAGATAGATCTGATCTCTTACATGATCTCATTAAGACATTAAAAGCTTTAAGGTTTCGAACTCTCAAAGCAGAGATTACCACGCTTGCTGGGCGGGTGAAAAATGTTTTGTTCATCACTGAAGATCTTGATAACGGAGAGCAACATTATGCATGTATTAACTCCGTACATGAAGCGCTTAAAGAAGTGATGAAGAAGAGTACTACTACTGGTGGTCACGAATTAGATTATGGAAATGTTAAGCGTCAAAGGAGGACTAGGGATTAG 819 0.3883 MFLSKQYSKPYRATIPSTTYATKSDNHMNIFGGQPQPWSINHEPLFLVPPTPYTSLLNTRVPSSSHHRHLWINISDNTYGSKLSAQEIIEAKALAASKSHSEAERRRRERINNHLAKLRTMLPNTTKTDKASLLAEVINHVKELKRQISLIAETSEVPSESDELKVDGNDDENGNFVIKASLCCEDRSDLLHDLIKTLKALRFRTLKAEITTLAGRVKNVLFITEDLDNGEQHYACINSVHEALKEVMKKSTTTGGHELDYGNVKRQRRTRD 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03327 272 FunFam transcription factor bHLH30 90 153 - -
Trre9g03327 272 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 99 154 IPR036638 GO:0046983
Trre9g03327 272 CDD bHLH_AtAIG1_like 90 167 - -
Trre9g03327 272 PANTHER TRANSCRIPTION FACTOR BHLH30 75 269 IPR045847 GO:0003700|GO:0006355
Trre9g03327 272 Pfam Helix-loop-helix DNA-binding domain 98 144 IPR011598 GO:0046983
Trre9g03327 272 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 95 144 IPR011598 GO:0046983
Trre9g03327 272 MobiDBLite consensus disorder prediction 251 272 - -
Trre9g03327 272 Gene3D - 90 152 IPR036638 GO:0046983
Trre9g03327 272 SMART finulus 101 150 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03327 Trre-Chr9 41949469 41950629 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03327 63 268 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G68810 60.352 7.55e-74 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Trre9g03327 HLH 1.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03327 - - aew:130792596 254.988