Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03324 ATGGCTGGGCCATCATGGTTGGTCGACAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCATGTGATCCGAAAAGTATTACATGGAAAAGCAATCCTACCAAGACTTGCCCAAATTGTCAGCATGTTATTGACAATAGTAATCTTGCAAAAGAGTGGCCGGGCTTGCCAAAAGGTGTTAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAAATTTAAAACCTCATCCTTTCGTAGATGAGTTTATTATTACTCTTGAAGTGGATGATGGAATATGTTACACTCATCCTCAAAACTTACCTGGTGTAAAGCAAGATGGAAATGCAACCCACTTTTTCCACAGAGCAATTAAGGCTTACAATACTGGCACTCGAAAGCGCCGAAAAATACATGATCAGGATTTTGGTGATGTTCGCTGGCACAAAACTGGAAGAACTAAACCAGTAATATTGAATGGAGCTCAAAAAGGCTGTAAAAAGATAATGGTTTTGTATATGAGTACGAGGGGAGGTAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAACAGAAGAGGATGAAAACGACGGGGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAGCATGTCAAATTGGGTGATATAGATGAACAAGATATTCCTGAAGTCACTGAAGATACAATCATAAAAGTGGATCCGGTTACTCCCAAATCTGTGACTCCCGATCCTCCTCATAATGAAAGGCTGTATTCGGATGTTGATATAGGAGATGAAACACTTGCCATTCCTCAGCCTCAGATGGATTGTCCGGATGAAATACAAGCTGATTGTGAAGAGCGTGCAAAAGAGGATCTATCAGTGGTAGGAACTGAACATAATGAAGTGACAGATTCACAATATCTATTAGATTCACAAAATCTGTTAGATTCACAACAACTGGTTGAAGCATTAGCCTTGTGCGACGATTTATTTCATAGCCAATCTCCCACTAGGGATGGAGAACATGAAGAAAAAAAGAACCAACCTGGTTTTTCTGTTTACGCTCAGCTAGGACCAGAACATCTGAAGAAGGATATCGAAGACTGTCAAAATCTTGTCATTGAGCCGGTAAATCTAGAGCACGACACACCAGCTGCAGAGTTACGACTAAGTCAATTGGACTTTAGTTCGCAAGATAGCTTTATAGCCTGGGGTTACAACAAAGAAGTAAGGTAA 1242 0.3986 MAGPSWLVDKSRIATKIKCASGACDPKSITWKSNPTKTCPNCQHVIDNSNLAKEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNLKPHPFVDEFIITLEVDDGICYTHPQNLPGVKQDGNATHFFHRAIKAYNTGTRKRRKIHDQDFGDVRWHKTGRTKPVILNGAQKGCKKIMVLYMSTRGGKAEKTNWVMHQYHLGTEEDENDGEFVISKVFYQQQHVKLGDIDEQDIPEVTEDTIIKVDPVTPKSVTPDPPHNERLYSDVDIGDETLAIPQPQMDCPDEIQADCEERAKEDLSVVGTEHNEVTDSQYLLDSQNLLDSQQLVEALALCDDLFHSQSPTRDGEHEEKKNQPGFSVYAQLGPEHLKKDIEDCQNLVIEPVNLEHDTPAAELRLSQLDFSSQDSFIAWGYNKEVR 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03324 413 SUPERFAMILY NAC domain 43 215 IPR036093 GO:0003677|GO:0006355
Trre9g03324 413 Pfam No apical meristem (NAM) protein 59 196 IPR003441 GO:0003677|GO:0006355
Trre9g03324 413 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
Trre9g03324 413 FunFam NAC domain-containing protein 8 67 219 - -
Trre9g03324 413 ProSiteProfiles NAC domain profile. 58 215 IPR003441 GO:0003677|GO:0006355
Trre9g03324 413 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 372 IPR044799 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03324 Trre-Chr9 41939023 41942404 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03324 14 225 NAC Transcription Factor Family AT1G28470 52.703 2.32e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g03324 NAM 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03324 - - gmx:100799488 654.825