Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03323 ATGGCTGGGCCATCATGGTTGGTCGACAAAAGTAGAATTGCAACCAAAATAAAATGTGCATCAGGAGCATGTGATCCGAAAAGTATTACATGGAAAAGCAATCCTACCAAGACTTGCCCAAATTGTCAGCATGTTATTGACAATAGTAATCTTGCAAAAGAGTGGCCGGGCTTGCCAAAAGGTGTTAAATTTGATCCATCTGATCAGGAGATAATTTGGCACTTGCTTGCAAAAGTTGGTGTAGGAAATTTAAAACCTCATCCTTTCGTAGATGAGTTTATTATTACTCTTGAAGTGGATGATGGAATATGTTACACTCATCCTCAAAACTTACCTGGTGTAAAGCAAGATGGAAATGCAACCCACTTTTTCCACAGAGCAATTAAGGCTTACAATACTGGCACTCGAAAGCGCCGAAAAATACATGATCAGGATTTTGGTGATGTTCGCTGGCACAAAACTGGAAGAACTAAACCAGTAATATTGAATGGAGCTCAAAAAGGCTGTAAAAAGATAATGGTTTTGTATATGAGTACGAGGGGAGGTAAAGCTGAGAAAACTAATTGGGTTATGCATCAATATCATCTAGGAACAGAAGAGGATGAAAACGACGGGGAATTTGTTATCTCTAAAGTGTTTTACCAGCAGCAGCATGTCAAATTGGGTGATATAGATGAACAAGATATTCCTGAAGTCACTGAAGATACAATCATAAAAGTGGATCCGGTTACTCCCAAATCTGTGACTCCCGATCCTCCTCATAATGAAAGGCTGTATTCGGATGTTGATATAGGAGATGAAACACTTGCCATTCCTCAGATGGATTGTCCGGATGAAATACAAGCTGATTGTGAAGAGCGTGCAAAAGAGGATCTATCAGTGGTAGGAACTGAACATAATGAAGTGACAGATTCACAATATCTATTAGATTCACAAAATCTGTTAGATTCACAACAACTGGTTGAAGCATTAGCCTTGTGCGACGATTTATTTCATAGCCAATCTCCCACTAGGGATGGAGAACATGAAGAAAAAAAGAACCAACCTGGTTTTTCTGTTTACGCTCAGCTAGGACCAGAACATCTGAAGAAGGATATCGAAGACTGTCAAAATCTTGTCATTGAGCCGGTAAATCTAGAGCACGACACACCAGCTGCAGAGTTACGACTAAGTCAATTGGACTTTAGTTCGCAAGATAGCTTTATAGCCTGGGGTTACAACAAAGAAGTAAGGTAA 1236 0.3972 MAGPSWLVDKSRIATKIKCASGACDPKSITWKSNPTKTCPNCQHVIDNSNLAKEWPGLPKGVKFDPSDQEIIWHLLAKVGVGNLKPHPFVDEFIITLEVDDGICYTHPQNLPGVKQDGNATHFFHRAIKAYNTGTRKRRKIHDQDFGDVRWHKTGRTKPVILNGAQKGCKKIMVLYMSTRGGKAEKTNWVMHQYHLGTEEDENDGEFVISKVFYQQQHVKLGDIDEQDIPEVTEDTIIKVDPVTPKSVTPDPPHNERLYSDVDIGDETLAIPQMDCPDEIQADCEERAKEDLSVVGTEHNEVTDSQYLLDSQNLLDSQQLVEALALCDDLFHSQSPTRDGEHEEKKNQPGFSVYAQLGPEHLKKDIEDCQNLVIEPVNLEHDTPAAELRLSQLDFSSQDSFIAWGYNKEVR 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03323 411 PANTHER NAC DOMAIN-CONTAINING PROTEIN 73 5 370 IPR044799 GO:0003700
Trre9g03323 411 Pfam No apical meristem (NAM) protein 59 196 IPR003441 GO:0003677|GO:0006355
Trre9g03323 411 SUPERFAMILY NAC domain 43 215 IPR036093 GO:0003677|GO:0006355
Trre9g03323 411 FunFam NAC domain-containing protein 8 67 219 - -
Trre9g03323 411 ProSiteProfiles NAC domain profile. 58 215 IPR003441 GO:0003677|GO:0006355
Trre9g03323 411 Gene3D NAC domain 67 220 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03323 Trre-Chr9 41939023 41942404 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03323 14 225 NAC Transcription Factor Family AT1G28470 52.703 1.59e-72 228
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g03323 NAM 2.8e-21 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03323 - - gmx:100799488 651.358