Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03322 ATGCTCAAATTACTACTTCCATTTATTCAACAAATTTGTGAAGAACAAAGTCAAGAACAAGAGATTGAAGCACAAATACAAGGAAAATCATGTTTTGAGATTCAAATTCCACAAACTCAATGTTATGATGATGAACGTGTCTATTGTGACCATTGTGCTACTTCAATTGTTGACTTTCATAGAAGTTGTCCCAATTGTTCATTTGAGATCTGCCTCAGTTGTTGTAAGGAAATACGCAGTGGAAGCGTTAAACCACGGTTTGAAATGAAGGTTCAATACATAGATAGAGGATACAACTATATGTATGGTGGTGATCCTGATCTTATGTATTCAGTATCTTGTAATGCAAGTAATGCAGAGCGGCATGTTCAGATATTCCCCAAATGGAATGCAAAAAGAGATGGAAGTATTGGATGTGCACCAAAAGAACTTGGAGGTTGTGGTGAAAGTATAATGGAGCTCAAACGTATGCTTCCAGATGGGAGAATACCCAATTTGCTAACCAAGGCACACAATATGCTAAAACGTTTTTGCCATATTGAAGATGAATGGAATGCTAAGGAAGCAGTATCAAGTTGCCAAACGGATAACATCATCTACCTTCCAATGTCAAGTGGTCTATTGAAAGATGGTTTATTTGAATTTCAGAAGCATTGGAGGAAAGGTGAGCCAATTATAGTACGTGACGTTCTTAATCAAGGGGCAGGTCTTAGTTGGGATCCGATGGTTACATTTAGAGCCTTGTGTAGAAATTTGGCCTCAGGTGACAACTCAAATGATGCATCCGAAATTAAAGCTATTGATTGCTTATCCGGTTGTGAGGGAGAAATTAACACTCGCAAGTTCTTCGAAGGTTATAAGGAGGGAAGAAAATATATAAACTTATGGCCAGAGATGCTCAAGATAAAAGACTGGCCTCCTTCTGATACGTTTGAAAATGTGTTGCCGCGACATTATGATGAGTTTATTTGTTGCTTGCCGTTTCAAGAGTATTGCGATCCTCAAGCTGGAATCCTTAACCTTGCAACGAAGTTACCTCCACGTGTGATAAAGCCTGACTTGGGGCCAAAAACTTATATTGCTTATGGAATCAAAGAAGAACTTGGAAGAGGAGATTCTGTTACAAAACTTCATTGTGATATGGCAGACGCGGTGAATATTTTGACTCATACAACAGAGGTGAAATTAACTGATGACCAATATTCTGCTATTAGAAAAATAAAAAGAGCAAATGAAGCTCAAGATAAGAAAGAGGGTCTTGTTCAAAATAATAGAGGCCCTTTTAAGATTGATGGAAACTGTTTTCCAAATGAAGTGTCATCTATCACAAAAGAAACAACAGAAATAGGTGGTGCTCTTTGGGACATATTCAGAAGAGAAGATACCAAAAAGTTAGAAGCATATCTAAGAAAACATTCCAAAGAATTTAGGCATATTTATTGTTCTCCGGTAAAACAGGTTTCTCATCCAATTCATGACCAATGTTTTTATTTGACTTTGGAGCATAAGAAGAAGCTAAAGGAAGAGTTTGGAGTAGAACCTTGGACATTTGAGCAGAAACTGGGTGAAGCGGTGTTTATACCTGCTGGATGTCCACACCAAGTTAGGAATCTCAAGTCTTGCACAAAAGTTGCTGTAGATTTTGTGTCGCCAGAAAATGTGCCTATTTGCATGCAATTAACTGATGAGTTTCGTCATCTTCCTAAGAATCACAAGGCAAGAGAAGACAAACTTGAGATAAAGAAGATGATAGTCTATTCTATTGACCATGTTGTTAAAGAATAA 1785 0.3754 MLKLLLPFIQQICEEQSQEQEIEAQIQGKSCFEIQIPQTQCYDDERVYCDHCATSIVDFHRSCPNCSFEICLSCCKEIRSGSVKPRFEMKVQYIDRGYNYMYGGDPDLMYSVSCNASNAERHVQIFPKWNAKRDGSIGCAPKELGGCGESIMELKRMLPDGRIPNLLTKAHNMLKRFCHIEDEWNAKEAVSSCQTDNIIYLPMSSGLLKDGLFEFQKHWRKGEPIIVRDVLNQGAGLSWDPMVTFRALCRNLASGDNSNDASEIKAIDCLSGCEGEINTRKFFEGYKEGRKYINLWPEMLKIKDWPPSDTFENVLPRHYDEFICCLPFQEYCDPQAGILNLATKLPPRVIKPDLGPKTYIAYGIKEELGRGDSVTKLHCDMADAVNILTHTTEVKLTDDQYSAIRKIKRANEAQDKKEGLVQNNRGPFKIDGNCFPNEVSSITKETTEIGGALWDIFRREDTKKLEAYLRKHSKEFRHIYCSPVKQVSHPIHDQCFYLTLEHKKKLKEEFGVEPWTFEQKLGEAVFIPAGCPHQVRNLKSCTKVAVDFVSPENVPICMQLTDEFRHLPKNHKAREDKLEIKKMIVYSIDHVVKE 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03322 594 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 1 594 IPR045109 GO:0032454|GO:0033169
Trre9g03322 594 SMART cupin_9 315 565 IPR003347 -
Trre9g03322 594 ProSiteProfiles JmjC domain profile. 334 565 IPR003347 -
Trre9g03322 594 SUPERFAMILY Clavaminate synthase-like 214 584 - -
Trre9g03322 594 Gene3D Cupin 194 574 - -
Trre9g03322 594 FunFam Transcription factor jumonji domain-containing protein 196 574 - -
Trre9g03322 594 Pfam JmjC domain, hydroxylase 451 548 IPR003347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03322 Trre-Chr9 41930365 41933345 Dispersed/Tandem
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Trre9g03322 JmjC 8.5e-15 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03322 K15601 K21989 gmx:100801772 837.41