LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Trre9g03318	ATGGATGGAGGTAGTTGCATAGATGAAAGCACCACCACCGAATCACTCTCCATAACAATACCACCAACAAAAAAACCATCAACGCCGCCACCTCCGAATAGTCTATGCCGTGTCGGCAGCGGCGCGAGTGCGGTCGTGGACTCCGATGGCAGCGGCGTTGGAGAAGCCGAGTCACGGAAGCTTCCCTCATCCAAGTACAAAGGCGTGGTGCCGCAACCAAATGGCCGTTGGGGAGCACAGATTTATGAAAAGCATCAACGTGTGTGGCTTGGTACCTTTAACACAGAAGATGAAGCTGCAAGAGCATACGATGTTGCCGCGCAACGGTTCCGCGGCAAAGACGCCGTAACAAACTTCAAACCACTCTCCAACGATTACAATGACGACATGGAAGTCGAGTTTCTTAACTCGCATTCCAAGTCGGAGATTGTTGACATGTTAAGAAAACACACATACAATGACGAGTTAGAACAGAGTAAGCGCAGCCGTGGCTTCCTCAATAGAAGAAGCCACGGAAGCTTAAACTGTTCTAACCTCGCCAGTTTCGCATCCGGTGAAAAAAAGGCGCGTGAGGATCTATTCGAGAAAGTTGTTACTCCGAGCGACGTTGGTAAACTAAACAGGCTAGTTATACCGAAACAACACGCCGAGAAGCATTTTCCATTACAGAAAGCCGTCGATTGCGGCGCTTCCATCAGCGCCGCAGTGACGGCAGGGAAAGGAGTTCTTTTAAATTTTGAAGACATTGGAGGGAAAGTATGGCGGTTTAGATACTCTTATTGGAACAGTAGCCAAAGCTACGTTCTAACTAAAGGATGGAGCCGGTTCGTTAAAGAGAAGAATCTGAAAGCCGGTGATACGGTTTGTTTTCAACGGTCTACTACTGAACCGGATAAGCAGCTTTTTATTGATTGGAAAACAAGAAAGAATGTTGTCCCGGTTGGACCGGTTGTTGAACCGGTTCAGATGGTTCGGTTATTTGGGGTTAATATTTTGAAACTCCCTGGATCCGATGTTAATAATAATAATGGCAATGCTATTGCTGCTGGGTTCTGTAATAATGGAAAGAGGAGAGAGATGGAAATGTTTACTTTGGAATCTTGCAAGAAGCCTAAGTTTATTGGAGCTTTGTAA	1134	0.4638	MDGGSCIDESTTTESLSITIPPTKKPSTPPPPNSLCRVGSGASAVVDSDGSGVGEAESRKLPSSKYKGVVPQPNGRWGAQIYEKHQRVWLGTFNTEDEAARAYDVAAQRFRGKDAVTNFKPLSNDYNDDMEVEFLNSHSKSEIVDMLRKHTYNDELEQSKRSRGFLNRRSHGSLNCSNLASFASGEKKAREDLFEKVVTPSDVGKLNRLVIPKQHAEKHFPLQKAVDCGASISAAVTAGKGVLLNFEDIGGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFQRSTTEPDKQLFIDWKTRKNVVPVGPVVEPVQMVRLFGVNILKLPGSDVNNNNGNAIAAGFCNNGKRREMEMFTLESCKKPKFIGAL	377

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Trre9g03318	377	MobiDBLite	consensus disorder prediction	1	69	-	-
	Trre9g03318	377	SUPERFAMILY	DNA-binding domain	64	120	IPR016177	GO:0003677
	Trre9g03318	377	MobiDBLite	consensus disorder prediction	1	22	-	-
	Trre9g03318	377	Pfam	B3 DNA binding domain	194	305	IPR003340	GO:0003677
	Trre9g03318	377	PRINTS	Ethylene responsive element binding protein signature	66	77	IPR001471	GO:0003700\|GO:0006355
	Trre9g03318	377	PRINTS	Ethylene responsive element binding protein signature	86	102	IPR001471	GO:0003700\|GO:0006355
	Trre9g03318	377	PANTHER	B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3	60	342	IPR044800	GO:0003700
	Trre9g03318	377	CDD	AP2	64	119	IPR001471	GO:0003700\|GO:0006355
	Trre9g03318	377	Gene3D	AP2/ERF domain	64	121	IPR036955	GO:0003700\|GO:0006355
	Trre9g03318	377	ProSiteProfiles	AP2/ERF domain profile.	65	120	IPR001471	GO:0003700\|GO:0006355
	Trre9g03318	377	SUPERFAMILY	DNA-binding pseudobarrel domain	193	294	IPR015300	-
	Trre9g03318	377	SMART	B3_2	194	300	IPR003340	GO:0003677
	Trre9g03318	377	Pfam	AP2 domain	64	112	IPR001471	GO:0003700\|GO:0006355
	Trre9g03318	377	FunFam	AP2 domain-containing protein RAP2.8	64	121	-	-
	Trre9g03318	377	CDD	B3_DNA	193	293	IPR003340	GO:0003677
	Trre9g03318	377	SMART	rav1_2	65	126	IPR001471	GO:0003700\|GO:0006355
	Trre9g03318	377	ProSiteProfiles	B3 DNA-binding domain profile.	194	309	IPR003340	GO:0003677
	Trre9g03318	377	Gene3D	-	188	312	IPR015300	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Trre9g03318	Trre-Chr9	41859983	41861116	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Trre9g03318	5	377	B3 DNA Binding Superfamily	AT1G25560	58.701	1.73e-135	389

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	AP2/ERF-RAV	Trre9g03318		B3	2.2e-28	CL0405

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Trre9g03318	K09287		-	gmx:100776987	541.962