Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03309 ATGGTTCCAATGCAATTCAACCACAAAATGGATTTTCATGACTACATCCAAGCACTGCAGGAAGAAAAGAAGAAAATTCAGGTTTTCCCTAGAGATCTTCCTCTTTCTCTCGACCTTGTTACCCAAGCCATTGAAAGGTGTAAGCAACAGTTGTCTGGTATAACGACAGAGTACAATTTGAATCGGGAAACAGAGTGTTCGGAACAGACATCGACGGAAGAAGGTTGTGTTTTTGAGGAGTTTATTCCTATCAAGAAAAGATCATTAACACCTGATTATGATGAAGAAGATGATGATTTTGATGAGCGACATTTATCGCATAAGAAGAAATCTGATTGGCTAAGATCCGTTCAGCTGTGGAATCCTAGCCCACCACCTGCCAAAGAGGAAGTACCTAGGAAAACAAATGTCGTCGAAGTGAAGAGAAGTGGTGGTGCATTTCATCCATTTCACAGAGAGGAAATTGCTGCTGAAAAAGGTAATGCATCAGAAGCATGTAAAGAATCAACGACTTCACTACAAGTACCTGCTACAAGTTCTACTGAACCTGTTGTTGGAACCAGTAGCAAAAGAGAGGATAAAGGACAGAGGAAGCAGCGTCGGTGCTGGTCACAGGAACTGCATAAGTGCTTCTTGCACGCTCTACAACAACTCGGCGGTTCAGATTCTGCCACGCCGAAACAGATAAGAGAACTAATGAAAGTTGATGGCCTCACCAATGACGAAGTCAAAAGTCATTTGCAGAAATTTCGCCTGCACACAAGAAGGAGTCCGATAACTCACAACAATGCGAGTTCACAATCAACGCCGATGTTCCTGGTGGGGAACATTTATGTTCAACCACAAGAGTATGCTGCAGTAGCTACGACTCCAACCGTGTCGCGGGAATTAACTAAAATTACTACTCCAACAGGAATCTATGCACCTTTGGCTTTACATCCTCCAACTACAACTACAGTTATAAAACCAAAGTTTAAGAAATTAGAGTTGAGTGAAAATTCAAATTCTGAAGAAAGGACTAATCACAGTGAAGGCGCTATTGTTCATTCTAACTCCCCTGCATCATCATCTTCCACTCATAACATAACAACTTCACCTCATTGTTGA 1107 0.4182 MVPMQFNHKMDFHDYIQALQEEKKKIQVFPRDLPLSLDLVTQAIERCKQQLSGITTEYNLNRETECSEQTSTEEGCVFEEFIPIKKRSLTPDYDEEDDDFDERHLSHKKKSDWLRSVQLWNPSPPPAKEEVPRKTNVVEVKRSGGAFHPFHREEIAAEKGNASEACKESTTSLQVPATSSTEPVVGTSSKREDKGQRKQRRCWSQELHKCFLHALQQLGGSDSATPKQIRELMKVDGLTNDEVKSHLQKFRLHTRRSPITHNNASSQSTPMFLVGNIYVQPQEYAAVATTPTVSRELTKITTPTGIYAPLALHPPTTTTVIKPKFKKLELSENSNSEERTNHSEGAIVHSNSPASSSSTHNITTSPHC 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03309 368 MobiDBLite consensus disorder prediction 330 368 - -
Trre9g03309 368 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 195 255 IPR017930 -
Trre9g03309 368 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 11 338 IPR044787 GO:0003700|GO:0006355
Trre9g03309 368 FunFam Myb family transcription factor 197 255 - -
Trre9g03309 368 NCBIfam myb-like DNA-binding domain, SHAQKYF class 198 253 IPR006447 GO:0003677
Trre9g03309 368 MobiDBLite consensus disorder prediction 159 200 - -
Trre9g03309 368 MobiDBLite consensus disorder prediction 330 344 - -
Trre9g03309 368 SUPERFAMILY Homeodomain-like 196 256 IPR009057 -
Trre9g03309 368 MobiDBLite consensus disorder prediction 164 186 - -
Trre9g03309 368 Gene3D - 197 255 - -
Trre9g03309 368 MobiDBLite consensus disorder prediction 345 368 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03309 Trre-Chr9 41719544 41721469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03309 1 312 G2-like Transcription Factor Family AT1G68670 46.884 7.30e-77 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Trre9g03309 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03309 - - gmx:100819750 433.335