Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03284 ATGGCTTTAAAAGACAAATTGGTATCTTCTTCAGAAACGACGTCGTGTGAAGAACGATATGTAAGCTATGAAGAGGTGTTCGTATCAATGGATAAGGGTCGGAAAGAGGTTCGGTATTATCTTAAAAAGAAAAACGGTGGTTCGGATCTTGCTCTTATAGGTAAAGAAAAGAATTCGAGACACATGTCTTATCACTATGCAATAAGAAAATCTTCTTTGGCTCCTTTTTTCAAACTCAAATCTCGTAAAGAAGTTCTTGATTGGTTGGATTCAATTATTCAAGATTTTTCTGCCGGGGATGCGAATATGGTTGAGGGAAAAAATGGTTATGAACCTGCTGATATTGGAACCTTGAAGGATAATCAATTGCCGAAGCTGCGTCTTTGTACAAAAGAATTTGCTTGGTTAGGTTCACCGTGGATTTGTAAGAAAAGAAGATATCACTATCAGTCATTTAAGCGGAATGGTTTTCAGATATCTGTGAATGATTTTGTGTTTGTTTTAGCAGAAGAGAACAAACGTCTGGTTGCCTACTTGGAAGACATGTACGAGGATTCCAGAGGCAACAAGATGGTTGTAGTTCGCTGGTTTCACAGAATTGATGAGGTTGGTATTGTTTTGCCTCACAGTTTTAGTGAAAGAGAGGTTTACTTTTCTCTTTATCTTCAAGATCTGAGTATTGAATGCATAGATGGTTTGACTTCCGTCCTCAGTCCCCAGCATTACGAGAAGTATCGGAATGAAGCTTGTCATGCTCGTCCAGAACCATTTGTGTGCAGCAAGAAGTTTGATGATGATGATGTCAAACCGTTTGATATAACTCAAATGAAGGGTTATTGGAAACAGGAAATACTGAGGTCCATGTATCCCCACTCTGACTCAAAGTCTAATGGGAGTTCAGGGCAATCAGGAGATAGCCAGGATCTGGAAGAAAACCTCCATTCTTCTTCTGGGATCAGACCAAAGAAGAAGCAGCGTTTCACAAAAGTTGATGGAAAAGATGCGGTTGATTTCGTCACCCTTCCGTCAGAAAATGTGAATAATTTTAAGATTGAGGCCAAAACCAGTAGCGCAAACAACTCCTTGAAACTGGGTGTGTCCAGCAAGTTGGCTACCATCAAAGAGACAAATGAAGTTGCTTCACAGTATTTAGCTGTAGGTTCCAAAGTTGAGGTCCTCTCTCAAGACAGTGGGATTAGAGGATGTTGGTTTAGAGCTGCTGTTATCAAGAAGCACAAAGATAAAGTGAAGGTGCAATATCACGACATTCAGGATGCAGATGATGAAGCTAAGAAGCTCGAGGAATGGATTTTAGCTTCTAAAGTTGTGCTGCTTGATGATATGGGTCTCCGAGTACCTGAGAGGACCAAGATGCGGCCTCAGTCAACCAAACGTGGAATGTCGTTTGTGGGTGATGTTGGTTACATTGTTGATGCCTGGTGGCATGATGGATGGTGGGAAGGCATTGTTGTTCAAAAAGAGTCTGATATTAAATATCATGTTTATTTCCCAGGTGAAAAGAAATTGTTAATTTTTGGTCCTGGTAACTTAAGGCATTCTCAAGATTGGACCGGGAATGGATGGGTAAAAGTGAGGGAAAGGCCTGATCTTGTGGCGTCTATATTATCAAGCTTGAAAACAAAACAAAACAACTTGTGCAAATCAGTTAACAGGAAATCAACCGTAGAAGCTATTGGAGATGGAGTACAATCCAAGCAAGCTAATACTTTCTTGGGTTCTTCTGAAAGCGATGAAATTCGAAAGGCTGATGTAGTTCCAGATCTTTTGAAGGATGTTTTGTCATCCCGGTTAAGGTGGAAGTCATACCGGAAGAGGAATCGACGTGGTGGCTGTCACCAGAAGCAGCAGTCCAATGACAAACACAGGAGATTGTCCCCAAAGTTTCTGGAGTCGGATGCAACAGAAAGTTTTGTGATTCCAGCTTCATTGAAAGTTGACCATGATGACTGCAAATACCCCGGAGATCCTTCCATTTTCAGCTCCTCGGTCGTGCCATCTTTAACCAACATGGTCATGTGTAGGTGA 2046 0.4125 MALKDKLVSSSETTSCEERYVSYEEVFVSMDKGRKEVRYYLKKKNGGSDLALIGKEKNSRHMSYHYAIRKSSLAPFFKLKSRKEVLDWLDSIIQDFSAGDANMVEGKNGYEPADIGTLKDNQLPKLRLCTKEFAWLGSPWICKKRRYHYQSFKRNGFQISVNDFVFVLAEENKRLVAYLEDMYEDSRGNKMVVVRWFHRIDEVGIVLPHSFSEREVYFSLYLQDLSIECIDGLTSVLSPQHYEKYRNEACHARPEPFVCSKKFDDDDVKPFDITQMKGYWKQEILRSMYPHSDSKSNGSSGQSGDSQDLEENLHSSSGIRPKKKQRFTKVDGKDAVDFVTLPSENVNNFKIEAKTSSANNSLKLGVSSKLATIKETNEVASQYLAVGSKVEVLSQDSGIRGCWFRAAVIKKHKDKVKVQYHDIQDADDEAKKLEEWILASKVVLLDDMGLRVPERTKMRPQSTKRGMSFVGDVGYIVDAWWHDGWWEGIVVQKESDIKYHVYFPGEKKLLIFGPGNLRHSQDWTGNGWVKVRERPDLVASILSSLKTKQNNLCKSVNRKSTVEAIGDGVQSKQANTFLGSSESDEIRKADVVPDLLKDVLSSRLRWKSYRKRNRRGGCHQKQQSNDKHRRLSPKFLESDATESFVIPASLKVDHDDCKYPGDPSIFSSSVVPSLTNMVMCR 681
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03284 681 Pfam Agenet domain 387 460 IPR008395 -
Trre9g03284 681 MobiDBLite consensus disorder prediction 611 633 - -
Trre9g03284 681 SMART BAH_4 157 274 IPR001025 GO:0003682
Trre9g03284 681 Gene3D - 127 287 IPR043151 -
Trre9g03284 681 SMART agenet_At_2 469 525 IPR014002 -
Trre9g03284 681 SMART agenet_At_2 382 448 IPR014002 -
Trre9g03284 681 CDD Tudor_Agenet_AtDUF_rpt1_3 384 442 - -
Trre9g03284 681 MobiDBLite consensus disorder prediction 290 314 - -
Trre9g03284 681 Pfam BAH domain 159 265 IPR001025 GO:0003682
Trre9g03284 681 ProSiteProfiles BAH domain profile. 157 274 IPR001025 GO:0003682
Trre9g03284 681 PANTHER AGENET DOMAIN-CONTAINING PROTEIN-RELATED 371 630 - -
Trre9g03284 681 MobiDBLite consensus disorder prediction 290 328 - -
Trre9g03284 681 MobiDBLite consensus disorder prediction 619 633 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03284 Trre-Chr9 41430564 41433812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03284 394 523 PHD Transcription Factor Family AT5G58610 28.358 8.02e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03284 - - tpra:123911674 1218.37