Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03280 ATGTCTTCCTACTTTATGTTCAGTTTCATTTTCTTATCATGTTATTTTCTGCTTCTTCCCTCTGCTGAAGCTGAACTAAAATACCATATAGAATGTGAACAATTTTCTTATGTTGAGGAAATCTCCTTCCCCTACACCACCAATGATAACAAGGAATGTCGCTTTTACATTACAGCGAAAAAAATCGACGGCTACCACAAAATTGATAGCATCAAATCTATAAACAATTCAATTTTCATCTATATCCAGAATTATTCTGATTTTGATTTAGACTCAATTAAGAATACCCCAAAGTTCAGCCTTAACACTAGTACCTTCTATGGATGCAATCATGGTTCTGATGCCATCACTAAAACCATGTCCAAATATAGTATTAACTGTGATGATTACGATATCTACTTTACTTCTAATCCTGATTATCCTCCCATGCCCACTAATTTTCCATTTCCATGTTCAAAATACCATCCCCGTTACGGTTGTGCAAAATTATTTTCATTACTCGAAATTAAAGTAGATGAAGTGTCTTGTGAAGGATGCTATCGTCCAGCAAGCATATGTCTGTTAGATGAAGAAACTCTCAAATTAAATTGTGGCCCAGAAGCATTACCTCCTCTTGTACCAAAAGAAAAAGAACCATTACCTCCTCTTTATTATGATAATCAAACAAAGGGAAAGGAACGGAGTTCGGAGGAACGGAGTTCGGAGGAACGGCGTTTGGAGGCTGCAGTAATAGGTTTATCAATTGGATTGGCAACTGCATTGTTTGTTATTCTTTTTCTGTGTTATTGGAGAATCAAATCTTCAGAAGTGAAAAACCAATCAAGAACCAATTATCATGGTCTCTCAAGAAATACAACAATCCCGGAAAATGGAGCTGTCTACTTTGGAATCCCTGTCTTCTCGTATGATGAGCTCAAAGAAGCAACAAACAATTTTGATCAAGCTAGACAGATTGGAGAAGGGGGCTTCGGGACTATTTACTACGGAAAGCTTGGAGATGGACGTGAAGTTGCGGTGAAGCGCCTATTCGAGCGCAACTACAGACCAGTTGAATCATTCACGAACGAAATTCAAATCCTCACACGAATGCGCCACAGAAATCTTGTATCCCTTTATGGCTGCACATCGCGCCACAGTCGTGAGTTGCTGCTAGTATACGAATACGTCCCAAATGACACCGTCAGTAGCCATCTCCACGGAGAAAAAGCAAAAAATAACCCATCATTACCATGGGCAGTGAGAATAAAAATAGCCATAGAAACCGCGGGCGCATTGACTTATCTCCATGCTTCTGATGTCATTCACCGAGACGTGAAAACCAGCAACATTCTCCTTGACAACAGTTTTTGTGTTAAGGTTGCAGATTTTGGTCTTTCAAGACTATACCCTAACGATGTCACACACGTGTCTACAGCACCGAGAGGAACACCAGGATATGTTGATCCAGAATATCGCTTATGTTACCAACTGACAGACAAGAGTGATGTATATAGCTTCGGCGTAGTTCTTGTTGAGCTAATATCATCTTTGCCAGCAGTTGATTTGACACGGGATAGAGATGACATTAAGTTGGCAAATCTAGCCGTAAGGAAGATTCGAAGAAGCGAGTTTCATGAGTTGATTGATCCTTCTCTTGGTATTCAGACAAATGAGAGATTAAAAAATATGATAATTTCTGTTGCAGAATTGGCTTTTCAGTGTTTGCAAGATGAGAAAGAATTGAGACCCTCTATGAGTGAAGTATTGGAAGTGCTGCAGAGAATTGAAAGTGGGAAGAATGAGGGAGAGACTAATGAGGGGATTGATTTTCATCATGTAGTAGAAGTTGTACAAAGTTATGCACATCCATCACTTCCAAACACTTGGATGAAGCCGCAACGCCGTCAACAAACACTTTGA 1899 0.396 MSSYFMFSFIFLSCYFLLLPSAEAELKYHIECEQFSYVEEISFPYTTNDNKECRFYITAKKIDGYHKIDSIKSINNSIFIYIQNYSDFDLDSIKNTPKFSLNTSTFYGCNHGSDAITKTMSKYSINCDDYDIYFTSNPDYPPMPTNFPFPCSKYHPRYGCAKLFSLLEIKVDEVSCEGCYRPASICLLDEETLKLNCGPEALPPLVPKEKEPLPPLYYDNQTKGKERSSEERSSEERRLEAAVIGLSIGLATALFVILFLCYWRIKSSEVKNQSRTNYHGLSRNTTIPENGAVYFGIPVFSYDELKEATNNFDQARQIGEGGFGTIYYGKLGDGREVAVKRLFERNYRPVESFTNEIQILTRMRHRNLVSLYGCTSRHSRELLLVYEYVPNDTVSSHLHGEKAKNNPSLPWAVRIKIAIETAGALTYLHASDVIHRDVKTSNILLDNSFCVKVADFGLSRLYPNDVTHVSTAPRGTPGYVDPEYRLCYQLTDKSDVYSFGVVLVELISSLPAVDLTRDRDDIKLANLAVRKIRRSEFHELIDPSLGIQTNERLKNMIISVAELAFQCLQDEKELRPSMSEVLEVLQRIESGKNEGETNEGIDFHHVVEVVQSYAHPSLPNTWMKPQRRQQTL 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03280 632 Gene3D Transferase(Phosphotransferase) domain 1 389 612 - -
Trre9g03280 632 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Trre9g03280 632 Pfam Protein kinase domain 313 583 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03280 632 PANTHER LEAF RUST 10 DISEASE-RESISTANCE LOCUS RECEPTOR-LIKE PROTEIN KINASE-LIKE 1.4 7 600 IPR044652 GO:0004672
Trre9g03280 632 SUPERFAMILY Protein kinase-like (PK-like) 289 586 IPR011009 -
Trre9g03280 632 FunFam Wall-associated receptor kinase-like 20 389 598 - -
Trre9g03280 632 ProSiteProfiles Protein kinase domain profile. 312 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03280 632 SMART serkin_6 312 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03280 632 MobiDBLite consensus disorder prediction 206 234 - -
Trre9g03280 632 FunFam receptor-like protein kinase FERONIA 274 388 - -
Trre9g03280 632 Gene3D Phosphorylase Kinase; domain 1 288 388 - -
Trre9g03280 632 CDD STKc_IRAK 318 588 - -
Trre9g03280 632 ProSitePatterns Serine/Threonine protein kinases active-site signature. 433 445 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03280 Trre-Chr9 41405674 41408674 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03280 244 590 Receptor kinase-like Gene Family AT1G25390 60.458 3.95e-142 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Trre9g03280 Pkinase 2.6e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03280 - - var:108334729 575.474