Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03275 ATGGCACCACAACCACCTTCTCCTTCAATTCTACACATAACCATCATCACACTAACATTCCATTTCTTCCTCCTCACTCAAGCCACAAAAAACCCAGATTTCCATCCACTACTTGCATTCAAAATATCTTCAGACACATCTAACAAACTCACTTCATGGAACATTACCACAGACCTATGCACATGGTATGGTGTCTCCTGTCTTAGAAACCGTGTCTCCCGCCTTGTACTCGAAAACCTCGACCTCCACGGCTCCGTTGAACCGTTAACATCACTCACTCAGCTCCGTGTCCTCAGCCTTAAACGTAACAGTTTTAATGGTCCTATTCCAAATCTCTCCAACCTTACTTCATTAAGACTTCTCTTTCTCTCTTACAATAACTTCTCCGGTAAGTTACCGGAATCACTTACCTCGTTAACCCGTCTATACCGTCTTGATCTTTCCCATAACAATCTCTCCGGTGAGATTCCGGTAAATGTCAACAGTTTGTCTCGTCTCCTCACTCTTCGCCTCGATGGAAACCAAATTGAAGGACACATTCCAAATATAAACCTCTCTTACCTCCAAGACTTTAATGTCTCCGGTAACATTCTCTCTGGTCGAATACCGGAATTACTTTCGGGTTTTCCAGATTCGTCTTTTGCGCAAAACCCGTCTCTCTGTGGTACACCATTGCAAAAATGTAAAGATATTCCTGCCCTTGCTTCATCTTTGGTTCCACTTCCATCGTCTTCGGGTTCAATGCCGGGAAACAAGTCCCATAGAAATGGAGGTCCAAGAATGGGGACTTTGGTCTTAATTACCATTATCCTCGGCGATGTATTAGTACTCGCCATTGTTTCATTGCTTCTCTATTGCTACTTCTGGCACAACCACGCTAACAAGATGGAGGAAAGAAAAGAAGCAGATTCAAATTCAAAGAGTTTTGAGGGTGAAAATCAAAAGATGGTTTATATTGGGCAACAAGGGTTGGAGAAAGGTAATAAAATGGTGTTTTTCGAAGGGGCGAAGAGGTTCGAGTTAGAGGATTTGCTTCGTGCTTCAGCGGAAATGTTGGGGAAAGGTACACTTGGCACTGTCTACAAAGCTGTTCTTGATGATGGAAGTGTTATAGCTGTGAAGAGGTTGAAGGAAGTTCAGATTGGAGGGAAGAGAGAGTTCGAGCAGAGAATGGAAGTTCTTGGAAAGTTAAGACATTCCAACATTGTTAGCTTGAAAGCTTATTATTTTGCAAGGGATGAGAAATTGCTTGTCTTTGATTATATGGTTAATGGTAGCTTGTTCTGGCTACTTCATGGTAACCGTGGACCAGGGAGAACCCCACTTGACTGGACCACAAGGCTAAAGATAGCATCTGGAGCAGCACAAGGTGTGGCCTTCATTCACAACCAAAATAATAATCTCATCCACGGTAACATCAAATCCACAAACGTCTTAATCGACGTCTCTGGAAATGCACACGTGGCTGATTTTGGACTCTCAATTTTCACCACTCAATCAAACCGAAGATCAAATGGTTACCGCGCTCCAGAGTCATCAGACGGTCGAAAACAATCCCAAAAGTCTGACGTGTATGCTTTTGGTGTTCTGTTAATGGAGATATTAACAGGTAAGTGTCCCTCCGCCGTAGACGGAGGAACTGAGGTGGAGCTTCCTAAGTGGGTCCAGTCAGTGGTTAGAGAACAATGGACTGCTGAGGTTTTTGATCTTGAGCTGATGAGGTTTAAAAATGCTGAGGAGGATATGGTGACGTTGTTGCAGATTGCGCTGACGTGTACTGCGATTGTACCTGATCAACGGCCTAAGATGAGCCACGTGGTTAAGAGGATTGAGGAGTTGCGTGACGTGTCTTCGTGTCATGACACGTTGGATTCGGTTTATGACTCACCTTCTTTGTCCGATGATGCAACTGGAGGTGGAGCTATTCACTAA 1932 0.4394 MAPQPPSPSILHITIITLTFHFFLLTQATKNPDFHPLLAFKISSDTSNKLTSWNITTDLCTWYGVSCLRNRVSRLVLENLDLHGSVEPLTSLTQLRVLSLKRNSFNGPIPNLSNLTSLRLLFLSYNNFSGKLPESLTSLTRLYRLDLSHNNLSGEIPVNVNSLSRLLTLRLDGNQIEGHIPNINLSYLQDFNVSGNILSGRIPELLSGFPDSSFAQNPSLCGTPLQKCKDIPALASSLVPLPSSSGSMPGNKSHRNGGPRMGTLVLITIILGDVLVLAIVSLLLYCYFWHNHANKMEERKEADSNSKSFEGENQKMVYIGQQGLEKGNKMVFFEGAKRFELEDLLRASAEMLGKGTLGTVYKAVLDDGSVIAVKRLKEVQIGGKREFEQRMEVLGKLRHSNIVSLKAYYFARDEKLLVFDYMVNGSLFWLLHGNRGPGRTPLDWTTRLKIASGAAQGVAFIHNQNNNLIHGNIKSTNVLIDVSGNAHVADFGLSIFTTQSNRRSNGYRAPESSDGRKQSQKSDVYAFGVLLMEILTGKCPSAVDGGTEVELPKWVQSVVREQWTAEVFDLELMRFKNAEEDMVTLLQIALTCTAIVPDQRPKMSHVVKRIEELRDVSSCHDTLDSVYDSPSLSDDATGGGAIH 643
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03275 643 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 422 622 - -
Trre9g03275 643 Gene3D Phosphorylase Kinase; domain 1 315 421 - -
Trre9g03275 643 Gene3D Transferase(Phosphotransferase) domain 1 422 629 - -
Trre9g03275 643 Pfam Leucine rich repeat N-terminal domain 31 67 IPR013210 -
Trre9g03275 643 FunFam pollen receptor-like kinase 1 317 421 - -
Trre9g03275 643 ProSiteProfiles Protein kinase domain profile. 346 623 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03275 643 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 21 617 IPR046959 -
Trre9g03275 643 Gene3D Ribonuclease Inhibitor 27 88 IPR032675 -
Trre9g03275 643 Gene3D Ribonuclease Inhibitor 89 232 IPR032675 -
Trre9g03275 643 FunFam Leucine-rich repeat receptor-like protein kinase 30 182 - -
Trre9g03275 643 CDD STKc_IRAK 352 613 - -
Trre9g03275 643 SUPERFAMILY L domain-like 50 225 - -
Trre9g03275 643 Pfam Protein kinase domain 350 608 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03275 643 SUPERFAMILY Protein kinase-like (PK-like) 350 610 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03275 Trre-Chr9 41373439 41377112 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03275 33 639 Receptor kinase-like Gene Family AT1G68400 60.923 0.0 717
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Trre9g03275 Pkinase 1.6e-37 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03275 - - cam:105851082 810.831