Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03268 ATGGAAGAACAAATCCACAACACTAAAACAATAAATACAAATTCCACTAATTGTTTAAAATTATTTGGTTTTAGCGTCCACGAAGAAACCGATGAAGAATCATCGTCACCAGCATCAGCATCAGCACCAGCACCAACACCTGCACCAGCACCACCGGCACATGAAGATATAATTGGAAACACTTCAACGTCCGGTTCGATGGAGTCCATCAGCGGAGATGGTGGAACTTCAAGTATAAATCCTTCCTCCGGTGACCGGAAATATGAGTGTCAATATTGTTGTAGAGAATTCGCAAATTCACAAGCACTTGGTGGACACCAAAACGCGCATAAAAAAGAGCGGCAACAACTCAAACGAGCACAGTTACAAGCATCAAGAAACGCTGCCGTTTCGTTTGTTAGAAATCCGATTATCTCCGCTTTTGCACCGCCGCATCATCTTCTCACTTCGCCGGGACAAGTTATGATGCCGACTGCTTCTCCGTCGTGGGTTTACATGCCTCCACGGTCGGCTCCACCTCCTTTCCACGTGTCAGTTTCACACGGTTGTGCTTTTCCTTCTCCGAACAACGGTATTAGTAACTGTAACGGTGGTGGTAATAATAGTTATAGCTTTATAACAGGTGCAAGATCCGCGAGTGCAGGAGTGTTACCGTGTGTGAATGGAGTAGGTGATTCTTTACCCACATTGTCAACAATGGGCTCACAAGTACAGAGTATGGCCCAGTTTGGGAAACTTGATGGGCCATCTTTGAGTAGGTTCTCTAAAGCAGATGTAGGGCCCAACTTTGATGATGGATTTGGTTTGGATTTGCACCTTAGGCTATCCCCACCATGA 837 0.4552 MEEQIHNTKTINTNSTNCLKLFGFSVHEETDEESSSPASASAPAPTPAPAPPAHEDIIGNTSTSGSMESISGDGGTSSINPSSGDRKYECQYCCREFANSQALGGHQNAHKKERQQLKRAQLQASRNAAVSFVRNPIISAFAPPHHLLTSPGQVMMPTASPSWVYMPPRSAPPPFHVSVSHGCAFPSPNNGISNCNGGGNNSYSFITGARSASAGVLPCVNGVGDSLPTLSTMGSQVQSMAQFGKLDGPSLSRFSKADVGPNFDDGFGLDLHLRLSPP 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03268 278 ProSitePatterns Zinc finger C2H2 type domain signature. 90 110 IPR013087 -
Trre9g03268 278 SUPERFAMILY beta-beta-alpha zinc fingers 84 115 IPR036236 -
Trre9g03268 278 ProSiteProfiles Zinc finger C2H2 type domain profile. 88 115 IPR013087 -
Trre9g03268 278 MobiDBLite consensus disorder prediction 57 82 - -
Trre9g03268 278 MobiDBLite consensus disorder prediction 27 82 - -
Trre9g03268 278 PANTHER ZINC FINGER PROTEIN 5 6 277 IPR044299 GO:0010090
Trre9g03268 278 FunFam Zinc finger protein GIS3 76 138 - -
Trre9g03268 278 Gene3D Classic Zinc Finger 70 135 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03268 Trre-Chr9 41330647 41331483 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03268 1 277 C2H2 Transcription Factor Family AT1G68360 42.857 1.96e-51 167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03268 - - tpra:123911684 462.996