Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03222 ATGTGTAAGCGAAAGGCAACCATGCTAGTAGAATCCGATACTGAAGTGAAAAATTCAATGAGTCCCAACATTGGTGACGTCGGTGAAGATGAATCAACAAATTCATCGACAATTTTTTCTCTGTTTCTCCTATTTGGATTCATTATTAATCCTCGTAAGGGAATCCAACCTGCTTACTCATGCAATTTTTGTAGCCGAAAATTCCTTACACCGCAAGCATTAGGCGGTCATCAAAACTCCCACAAATTGGAGAGAAGACTCAGAAGAAGGACCGAAGCTAGTAACCAAGGGGTGGTAAGCCTAAACATTGAGACTCCATACCATGGGGGGTATGGATATCAATATAATGAATCTGGCAATATGATTCAGCTTCCAATGTCATCAAATTTTGATGCAAGAAATTTGCTTGTTCCATTGCAGGATATTCCACAGATAGATCAAGTGGTCAATGATGCCAATCAAAACATTGTTAATCAACAAGATACTATGACTGAGGTTGACTATGGTTCAATTTCAAATGGGGGTGATGATGTTGATCATGAAGACAAAGACACTCAAGAGGAGGAAGCAATCAAAGATGATTTGACCCTTAAGCTTTGA 600 0.3917 MCKRKATMLVESDTEVKNSMSPNIGDVGEDESTNSSTIFSLFLLFGFIINPRKGIQPAYSCNFCSRKFLTPQALGGHQNSHKLERRLRRRTEASNQGVVSLNIETPYHGGYGYQYNESGNMIQLPMSSNFDARNLLVPLQDIPQIDQVVNDANQNIVNQQDTMTEVDYGSISNGGDDVDHEDKDTQEEEAIKDDLTLKL 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03222 199 ProSiteProfiles Zinc finger C2H2 type domain profile. 59 86 IPR013087 -
Trre9g03222 199 MobiDBLite consensus disorder prediction 174 199 - -
Trre9g03222 199 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 58 129 IPR044246 GO:0009788
Trre9g03222 199 SUPERFAMILY beta-beta-alpha zinc fingers 58 86 IPR036236 -
Trre9g03222 199 MobiDBLite consensus disorder prediction 166 199 - -
Trre9g03222 199 Gene3D Classic Zinc Finger 47 105 - -
Trre9g03222 199 ProSitePatterns Zinc finger C2H2 type domain signature. 61 81 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03222 Trre-Chr9 40927046 40927645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03222 56 135 C2H2 Transcription Factor Family AT5G57520 40.449 2.48e-11 57.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03222 - - mtr:120577076 194.512