Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03217 ATGATATTGGTAAAATATGTTTTCGGGTGTGATTTGGATGCTGTAGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACAGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAGGACATTCAACGTGGTCATTGCTAA 342 0.4327 MILVKYVFGCDLDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGHC 113
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03217 113 Pfam Elongation factor Tu domain 2 44 111 IPR004161 GO:0005525
Trre9g03217 113 CDD EFTU_II 30 111 IPR033720 -
Trre9g03217 113 SUPERFAMILY Translation proteins 24 112 IPR009000 -
Trre9g03217 113 Gene3D Translation factors 25 113 - -
Trre9g03217 113 PANTHER ELONGATION FACTOR TU-RELATED 12 111 - -
Trre9g03217 113 FunFam Elongation factor Tu 25 113 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03217 Trre-Chr9 40895683 40897394 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03217 12 112 Eukaryotic Initiation Factors Gene Family AT5G60390 41.584 3.46e-15 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03217 K02358 - gmx:100791600 198.749