Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03216 ATGTACCAGTACATCAACATCAACATCATTACTATATCAGGGAGTATGGTAAAATATGTTTTCGGGTGTGATTTGGATGCTGTAGATGAGTACATTCCTGACCCTGTTCGCCAGCTTGACAAGCCTTTCTTGATGCCCATTGAAGATGTATTCTCAATTCAGGGACGAGGAACAGTTGCTACTGGTCGTGTTGAACAAGGAATCATCAAAGTTGGTGATGAAGTTGAGGTTTTGGGTCTGATGCAGGGTGGTCCTCTGAAAACAACAGTTACAGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGACAAGCCGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTAAAACGTGAGGACATTCAACGTGGTAAGGTCATTGCTAAGCCTGGTTCTGTAAAAACATCCAAGAAATTTGAGGCAGAGATATATGTACTCACAAAGGATGAGGGTGGGCGACACACTGCTTTCTTCTCCAACTATAGACCTCAGTTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAAATGTTAA 549 0.4226 MYQYININIITISGSMVKYVFGCDLDAVDEYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGKVIAKPGSVKTSKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPEKC 182
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03216 182 Pfam Elongation factor Tu domain 2 57 127 IPR004161 GO:0005525
Trre9g03216 182 Pfam Elongation factor Tu C-terminal domain 132 178 IPR004160 -
Trre9g03216 182 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 133 180 IPR009001 -
Trre9g03216 182 CDD EFTU_II 43 131 IPR033720 -
Trre9g03216 182 PANTHER ELONGATION FACTOR TU-RELATED 25 180 - -
Trre9g03216 182 Gene3D Translation factors 38 168 - -
Trre9g03216 182 SUPERFAMILY Translation proteins 37 133 IPR009000 -
Trre9g03216 182 FunFam Elongation factor Tu 38 168 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03216 Trre-Chr9 40895520 40899150 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03216 8 175 Eukaryotic Initiation Factors Gene Family AT5G60390 33.333 2.10e-15 71.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03216 K02358 - gmx:100776891 306.99