Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03205 ATGGTTAAGACAGAGATCAACAAAATCAACAAAGAAAAATCAAAGCCAATGCAACAAAAAACATTATTATCATCATCAACAAATGCATCAAATGAGATGAAGAAAAAGTACAAAGGAGTTAGAATGAGAAGTTGGGGTTCTTGGGTTTCAGAAATTAGAGCACCAAATCAAAAAACAAGAATATGGTTAGGTTCATATTCAACTGCAGAAGCTGCAGCTAGAGCTTATGATGCAGCACTTTTATGCCTTAAAGGTTCATCTGCAACAAATCTTAATTTTCCTTTAGAAATTTCTTCACATTTTATTCCTCAAGATAACACTTCTATGTCACCTAAATCAATTCAAAGAGTAGCTGCTGCTGCAGCAGCAGCTGCAGGTGTTGTTAGTAATAATGATATTGCTATTAGCACCCCACCATTTTCTCCTCATAATCATTCTTCAACAAGAACAACTTCATCTTCAATTGTTTCTTCTCCATCAATGTCATCTTCTCCTTGTGATCAAATTGATGATGATGTTTCACTTTTTTCTTCTTTTGGTGATTATCAAGTAAATGATTCAATGGCTATGATGGATTCTTGGTATGGTTTTGATGGTTTACAATCACCAAAACATGTTGATCAAATGATGCTAAATGGTGCTTTGTTTGATATTGATTCAACTCAAGTACTTCTTGATGATTGGTATGAAGAAAGTGACATTAGTTTGTGGAGCTTCTACTAA 723 0.3389 MVKTEINKINKEKSKPMQQKTLLSSSTNASNEMKKKYKGVRMRSWGSWVSEIRAPNQKTRIWLGSYSTAEAAARAYDAALLCLKGSSATNLNFPLEISSHFIPQDNTSMSPKSIQRVAAAAAAAAGVVSNNDIAISTPPFSPHNHSSTRTTSSSIVSSPSMSSSPCDQIDDDVSLFSSFGDYQVNDSMAMMDSWYGFDGLQSPKHVDQMMLNGALFDIDSTQVLLDDWYEESDISLWSFY 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03205 240 MobiDBLite consensus disorder prediction 1 15 - -
Trre9g03205 240 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 21 175 - -
Trre9g03205 240 PRINTS Ethylene responsive element binding protein signature 59 75 IPR001471 GO:0003700|GO:0006355
Trre9g03205 240 PRINTS Ethylene responsive element binding protein signature 37 48 IPR001471 GO:0003700|GO:0006355
Trre9g03205 240 SUPERFAMILY DNA-binding domain 36 96 IPR016177 GO:0003677
Trre9g03205 240 CDD AP2 35 94 IPR001471 GO:0003700|GO:0006355
Trre9g03205 240 MobiDBLite consensus disorder prediction 16 33 - -
Trre9g03205 240 ProSiteProfiles AP2/ERF domain profile. 36 94 IPR001471 GO:0003700|GO:0006355
Trre9g03205 240 MobiDBLite consensus disorder prediction 138 163 - -
Trre9g03205 240 FunFam ethylene-responsive transcription factor ERF014-like 35 96 - -
Trre9g03205 240 Pfam AP2 domain 36 85 IPR001471 GO:0003700|GO:0006355
Trre9g03205 240 SMART rav1_2 36 100 IPR001471 GO:0003700|GO:0006355
Trre9g03205 240 Gene3D AP2/ERF domain 35 96 IPR036955 GO:0003700|GO:0006355
Trre9g03205 240 MobiDBLite consensus disorder prediction 1 35 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03205 Trre-Chr9 40724795 40725517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03205 37 239 AP2-EREBP Transcription Factor Family AT1G21910 50.233 1.11e-46 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Trre9g03205 AP2 5e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03205 - - mtr:11436027 335.109
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03205 9 40724795 40725517 Trre9g03205 9 40724795 40725517 ECH