Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03204 ATGGGCGATTGGGTCTCGTCGGATGATAAAAGCCAACTGCTGAAAACAACTATTCAATTTGAGAAGATGCAGAAGCTTCTTCCGATTGAAAAAAGCCCTCTCGCTGACAAATTGATTGAGACAATTATTCAACCTGATGTTGTTCCTAGTTCTGTTGAATTTCTAGCTATGGATCATAGACCTCAACTTCAGTGGAAGGCTGCTTGGTTACTAGCATACATAGCATCTGGAACTTCTAAGCACACTAAGGCGGTCATTGATCACGGGGCAGTGCCCATATTTGTCAAGCTACTTAGTTCACCTAGTCATCATGCTCGCGAAAACGCTGCCTGGGCATTGGGAAACATTGCCGCTGATTCCCCTAGTTGCCGTGATCTTGTTCTCAGTCATGGTGCTCTCATCCCACTGTTATCCCACTTCAATGACCAATCAAACCTTAGAAATACCATGTGGACTCTGTTAAACTTTCTCGGGGGCAACCCACAACCCCCATTTGAGCAGGTGAGGCCAGCCCTTCCCGCTATCCAGCATTTGCTTTTTTCCAATGATGAACGAGTCCTGGCAGATACGTGTCGGGCACTCTCATTTCTTTCTTATGGACCACCAAAGGACAAAATCCAAGCCGTCATTGATGCAGGTGTATGTGGCAGACTGGTGCAGCTCCTTCTCCACCCATCTCCTTCAGTGCTGCTTCCTGCTCTTCACACCGTCGGAAATATTGTAACCGGAGGCGATATGCAGACTCAGGTAAAGTCATAA 759 0.469 MGDWVSSDDKSQLLKTTIQFEKMQKLLPIEKSPLADKLIETIIQPDVVPSSVEFLAMDHRPQLQWKAAWLLAYIASGTSKHTKAVIDHGAVPIFVKLLSSPSHHARENAAWALGNIAADSPSCRDLVLSHGALIPLLSHFNDQSNLRNTMWTLLNFLGGNPQPPFEQVRPALPAIQHLLFSNDERVLADTCRALSFLSYGPPKDKIQAVIDAGVCGRLVQLLLHPSPSVLLPALHTVGNIVTGGDMQTQVKS 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03204 252 Gene3D - 2 251 IPR011989 -
Trre9g03204 252 SUPERFAMILY ARM repeat 35 249 IPR016024 -
Trre9g03204 252 Pfam Armadillo/beta-catenin-like repeat 79 118 IPR000225 GO:0005515
Trre9g03204 252 Pfam Armadillo/beta-catenin-like repeat 204 241 IPR000225 GO:0005515
Trre9g03204 252 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 89 131 IPR000225 GO:0005515
Trre9g03204 252 SMART arm_5 78 118 IPR000225 GO:0005515
Trre9g03204 252 SMART arm_5 160 199 IPR000225 GO:0005515
Trre9g03204 252 SMART arm_5 202 242 IPR000225 GO:0005515
Trre9g03204 252 SMART arm_5 120 158 IPR000225 GO:0005515
Trre9g03204 252 SMART arm_5 35 76 IPR000225 GO:0005515
Trre9g03204 252 PANTHER IMPORTIN ALPHA 6 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03204 Trre-Chr9 40694548 40695708 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03204 42 147 U-box Gene Family AT3G54790 30.645 1.21e-06 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03204 K15042 - gmx:100780020 298.901