Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03201 ATGTCAATGAACCATGATCAAAGCAGACCATCCAAAAAGTGGTATAAGCTATGCTTTATTCCTGATGACAGTTCAGATGATTCTGATACCGAATCTGTAGTCATATCGCGAAGAATTTCAACTCAAACTAGTGCGAGGGAACGTTCTCCGCCACCATCACCGCCGAATCTAGAATCTCAAATAGGTTGGCTTTCTCCACCATTACCACTGCCTCCTCCTCCGCCTCCGGATCTGCCTCCACCTCCGCTTCCGCCTATGCCTCTGCTACGAACTATGCCTAGTTTTTCACCGTTAGTGCTGCAACGCCGATCCTCACAATCTCAGACTTCACTATCACCACTATCACCAAATCTAGAACCTGAAGTCAACTGGTATTCTGATTCTGACTATTCTCCACCACCATCTCCGCCGCAGCCTTCTTTAAGACCGTCATCACCATTAGTTTCGCTACAATTCCAGGCTGCAAATCAAGAACCGCAAATTAATTTGCGGTCTTCACAACCGCCTCCACCAAATCCAGAACTTCAAATCAACTGGCATTCTCCACCACCGCCACCACCACCGCCTTTTCTTCCATTACCACGAACATTACCAAATCTGGAACCTCAAATCAACTGGTATTCTACACTAACATCGCCATCTGTGACCAGACAAGATCGGCCTAATAACGATAAAAGTGAGTTCCTCCGAATTCCAGATAGTGTCATGAATGCCATTCACATGGTGACAATCTCAGAGTTGAATTTAATAGATGAACTCTCTCAATGTCCTATTTGCATGGAAGATTTTAAACTCGGCGATGAAGCATGTCAATTACCCTGCAACCATACATTCAAATTCGAATGCATACTTCGATGGCTTAACAACAGCGAAACATGTCCTGTTTGCAGGCTTCAGTTAAATGGTTTTGAAAGACAAGGTAGTTCTCATAATATCGTTGATGACGAAGATGATGATAGTTTGGACCTTGAACCTCAAATTCCATCACAAGTGATTAATAATAGTTTGGAAGACCATTTTGAATTTTCTGAGGATGGTGCCGCAGGTGACAACTCTGATGAAGCTGAATATGATAGTGCATGTGATGACTTAAATGATAATTGGTTTGGTAATTATCAAAGTAATCATAGTTTACAACTTTAA 1143 0.4252 MSMNHDQSRPSKKWYKLCFIPDDSSDDSDTESVVISRRISTQTSARERSPPPSPPNLESQIGWLSPPLPLPPPPPPDLPPPPLPPMPLLRTMPSFSPLVLQRRSSQSQTSLSPLSPNLEPEVNWYSDSDYSPPPSPPQPSLRPSSPLVSLQFQAANQEPQINLRSSQPPPPNPELQINWHSPPPPPPPPFLPLPRTLPNLEPQINWYSTLTSPSVTRQDRPNNDKSEFLRIPDSVMNAIHMVTISELNLIDELSQCPICMEDFKLGDEACQLPCNHTFKFECILRWLNNSETCPVCRLQLNGFERQGSSHNIVDDEDDDSLDLEPQIPSQVINNSLEDHFEFSEDGAAGDNSDEAEYDSACDDLNDNWFGNYQSNHSLQL 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03201 380 CDD RING-H2_PA-TM-RING 255 297 - -
Trre9g03201 380 MobiDBLite consensus disorder prediction 65 91 - -
Trre9g03201 380 Pfam Ring finger domain 255 297 IPR001841 -
Trre9g03201 380 SMART ring_2 256 296 IPR001841 -
Trre9g03201 380 ProSiteProfiles Zinc finger RING-type profile. 256 297 IPR001841 -
Trre9g03201 380 SUPERFAMILY RING/U-box 235 300 - -
Trre9g03201 380 PRINTS Proline rich extensin signature 124 141 - -
Trre9g03201 380 PRINTS Proline rich extensin signature 164 189 - -
Trre9g03201 380 PRINTS Proline rich extensin signature 43 55 - -
Trre9g03201 380 PRINTS Proline rich extensin signature 64 85 - -
Trre9g03201 380 MobiDBLite consensus disorder prediction 19 146 - -
Trre9g03201 380 MobiDBLite consensus disorder prediction 164 195 - -
Trre9g03201 380 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 113 297 - -
Trre9g03201 380 MobiDBLite consensus disorder prediction 161 195 - -
Trre9g03201 380 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 216 302 IPR013083 -
Trre9g03201 380 MobiDBLite consensus disorder prediction 97 124 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03201 Trre-Chr9 40647027 40648169 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03201 234 316 C3H Transcription Factor Family AT1G68180 37.500 2.00e-13 67.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03201 - K11982 tpra:123908673 306.219