Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03195 ATGGAGATTGACATAGACATAGACATAGACATAGACATGGTCATGGATGTTGTCCCTGATTTCATCGAATTCTCCAATTACAGCAACACCACAACCACACCCACTTCTGATGAAGGCATCACTTGGTCCCCTCTCCTCGATTTAGATTTATTCACCACAAACCAAGAAGAAGACTTCCACCACTTCATTGATTCCCTCACCAATGATGAAATCATAACCGTTGATCCAAATCTAGATAACACCGTCGCAGAGCATGATGAAGAAGAAGAAGAAGGATCCATGGGAGACATGTCCAACTCCAATTCCACAACTGAGGAAGACAACGACGGTGAAGATAGAAAGGGCCTCCGTCTGGTGCACCTCCTTATGGCGGCGGCGGAGGCCTTAACAGGCACAAACAAGAGCCACCATCTGGCTCAAGTGATATTGATTCGGCTCAAAGATTTAGTTTCTTCCACTCAAGGCACCAACATGGAGAGACTCGCCGCGTATTTTACCGACGCCCTCCAAACTCTACTAAACGGCGCCGATACTGCCCACGGTACCACCACCAACAGCAACCACCACGGCAACCTTTGCTTACTCACTGGATCCCATCAAACAGATTTTCTATCAGCCTTTCAGCTTCTTCAAGACATGTCCCCTTACGTTAAGTTCGCTCACTTCACGGCTAATCAAGCCATCCTTGAAGCTGTTACACATGAAAGAAGAGTTCACATAGTTGACTATGATATCATGGAAGGAGCCCAATGGGCTTCATTAATTCAATCACTTTCATCACGTAAAGAAGGCCTGCCGGGCCCACATCTTCGCATCACCGCGTTGTCCAGAAATAAAGAACGTGGCAGTGGTCGCAGAACAACCACTGCCACTGTTCAAGAAACTGGACGACGGTTAACGTCGTTTGCAGCTTCCGTTGGACAACCGTTTACTTTTCATCAATGTAGGTTGGATTCGGATGAAATATTTAGAGGTTCTTCTTTGAAGCTTGTTCGTGGTGAGGCTTTGGTGTTTAACTGTGTGATGCATTTACCACATCTTAGTTATCGTGCCTCAGATTCTATTGCTTCGTTTTTAAATGGTGCGAAAGAATTGGGATCAAAACTAGTGACATTAGTTGAAGAGGAGGTGGATCCCACTAGTGATGGAGGCTTTGTTGACTTGTTTATGGATTCTTTGCATCGTTATTCAGCTATGTATGATTCGCTTCAAGCTGGATTTCCTATGAATAAATGGGCTAGGAGTTTAGTTGAACAAGTGTTTTTGGGCCCAAGAATAATGGGCTCAGTGGCCCAATTATACATGAATGGTGAAGAAGAGGAGCAAGTGAGAGGTTCTTGGGGGGAGTGGTTGGGTGCGGAGGGGTTTAAGAGAGTTACCATAAGCTATGGTAATCATTGTCAATCGAAACTGTTATTGGGTCTATTTAACGATGGTTATAGGGTGGAGGAAATGGGTAACAATAAGTTGGTGTTGGGTTGGAAATCAAGGCCGTTGATTTCATCATCTATTTGGACTTGTATGTCAAAGTCAGAATTTGATTTTTAG 1548 0.4444 MEIDIDIDIDIDMVMDVVPDFIEFSNYSNTTTTPTSDEGITWSPLLDLDLFTTNQEEDFHHFIDSLTNDEIITVDPNLDNTVAEHDEEEEEGSMGDMSNSNSTTEEDNDGEDRKGLRLVHLLMAAAEALTGTNKSHHLAQVILIRLKDLVSSTQGTNMERLAAYFTDALQTLLNGADTAHGTTTNSNHHGNLCLLTGSHQTDFLSAFQLLQDMSPYVKFAHFTANQAILEAVTHERRVHIVDYDIMEGAQWASLIQSLSSRKEGLPGPHLRITALSRNKERGSGRRTTTATVQETGRRLTSFAASVGQPFTFHQCRLDSDEIFRGSSLKLVRGEALVFNCVMHLPHLSYRASDSIASFLNGAKELGSKLVTLVEEEVDPTSDGGFVDLFMDSLHRYSAMYDSLQAGFPMNKWARSLVEQVFLGPRIMGSVAQLYMNGEEEEQVRGSWGEWLGAEGFKRVTISYGNHCQSKLLLGLFNDGYRVEEMGNNKLVLGWKSRPLISSSIWTCMSKSEFDF 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03195 515 ProSiteProfiles GRAS family profile. 109 506 IPR005202 -
Trre9g03195 515 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 99 501 IPR005202 -
Trre9g03195 515 Pfam GRAS domain family 118 506 IPR005202 -
Trre9g03195 515 MobiDBLite consensus disorder prediction 84 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03195 Trre-Chr9 40435334 40436881 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03195 115 505 GRAS Transcription Factor Family AT3G03450 33.668 6.55e-52 183
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Trre9g03195 GRAS 2.4e-100 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03195 - - cit:102620887 588.956
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Trre9g03195 9 40435334 40436881 Trre9g03195 9 40435334 40436881 ECH