Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03180 ATGGCTACCCCAAAATACAAACTGCTCCTTTCTATCTGTATGTGTGTGATTCTTAACTTGTTGACAACAACAAAAGCAACACCAACTTACACAGCAAGTCACTGCACAAACACAACCTCTTACATAAAAAATCCACCCTCCACTTTCCAAACCAATCTCAAGGCCCTCTTATTTTCTTTATCCAATTCTTCATCTCCTGAATTTACAACCATTGCCGGTTTCGGCACTATTGATGCCGTCAACGGACACATCATGTGCCGCGGTGATGTCACCGACACAATCTGCGACGAGTGTGTCACTGCCGCAACTAAAGAGATAATAATTCGGTGTCCAGACCAAAAAGAAGCTCTCATTTGGTACGACGAGTGCTTCCTCCGTTACACAAACAGGTATTTTGCCTTCGACAATATCATCCCTAGAGCGAACCTTGATGACGGAAATATTTCCACCAGTGTTGACTTGAGAACATTCAACTGGTCCCTGGACGGGTTTCTGGATGATTTAGTTATAAATACTCTGTCGAGTTCTCAGTCAAAAACGTTCGCTTCCGGCGAAGTAGCGGTGACAGAGTTAACGAGGATATATGGATTGGTGCAGTGTATGGATGATTTAACGAGAAGGCAGTGTGAGACGTGTTTGGAAAATGCTATTGGAACCCTTCCTTATGGAAAACAGGGCGCAAGAGCTTTGCTTTCGTCTTGTAATGTAAGATACCAACTCTACCCTTTTTTTAATCTGTATTTGTCACCACCATCTTCAGGGGATAGCAAACTTGGACCTGGCACAATTGCGGTCGTGATTGTTGTGCTCGTTGTTTTCCTAATTATCTTATTTTTAGTTGAGGATGACATTCCAACATTGGAGTCATTGAAATTCAATTTGACTACTCTTGAAGCAGCAACTAACAAGTTCTCATTGGAGAATAAGATTGCAAGTGGAGGATTTGGACAAGTTTACAAGGGGAATTTGCTAGATGGACGACAAATAGCCGTAAAAAAACTTTCAAAAAATTCAGGACAAGGCACGATAGAATTCAAAAATGAGATTGTGCTAATAGCAAAACTGCAACATAGAAATTTGGTAACCTTGTATGGATTTTGCTCTGAGGAACAACAAAAAATGCTTGTTTATGAATATGTACCTAATAAAAGTCTCGATTACTTCTTATTTGATCCTAACAAAGGAAGAGTTTTGAGTTGGCATGAAAGATATAAAATTATAGGCGGAATTGCACGAGATGATTAG 1245 0.4016 MATPKYKLLLSICMCVILNLLTTTKATPTYTASHCTNTTSYIKNPPSTFQTNLKALLFSLSNSSSPEFTTIAGFGTIDAVNGHIMCRGDVTDTICDECVTAATKEIIIRCPDQKEALIWYDECFLRYTNRYFAFDNIIPRANLDDGNISTSVDLRTFNWSLDGFLDDLVINTLSSSQSKTFASGEVAVTELTRIYGLVQCMDDLTRRQCETCLENAIGTLPYGKQGARALLSSCNVRYQLYPFFNLYLSPPSSGDSKLGPGTIAVVIVVLVVFLIILFLVEDDIPTLESLKFNLTTLEAATNKFSLENKIASGGFGQVYKGNLLDGRQIAVKKLSKNSGQGTIEFKNEIVLIAKLQHRNLVTLYGFCSEEQQKMLVYEYVPNKSLDYFLFDPNKGRVLSWHERYKIIGGIARDD 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03180 414 Pfam Salt stress response/antifungal 155 240 IPR002902 -
Trre9g03180 414 Pfam Salt stress response/antifungal 35 129 IPR002902 -
Trre9g03180 414 Pfam Protein tyrosine and serine/threonine kinase 305 411 IPR001245 GO:0004672|GO:0006468
Trre9g03180 414 Gene3D - 141 243 IPR038408 -
Trre9g03180 414 Gene3D - 28 132 IPR038408 -
Trre9g03180 414 ProSiteProfiles Gnk2-homologous domain profile. 29 132 IPR002902 -
Trre9g03180 414 ProSiteProfiles Gnk2-homologous domain profile. 139 243 IPR002902 -
Trre9g03180 414 Gene3D Phosphorylase Kinase; domain 1 280 379 - -
Trre9g03180 414 SUPERFAMILY Protein kinase-like (PK-like) 290 412 IPR011009 -
Trre9g03180 414 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 30 412 - -
Trre9g03180 414 ProSiteProfiles Protein kinase domain profile. 304 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Trre9g03180 414 FunFam Cysteine-rich receptor-like protein kinase 10 278 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03180 Trre-Chr9 40283205 40286663 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03180 6 412 Receptor kinase-like Gene Family AT4G05200 40.220 4.36e-99 308
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Trre9g03180 PK_Tyr_Ser-Thr 4.3e-16 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03180 - - mtr:11442717 531.176