Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Trre9g03159 ATGATGCAGGGAAGTGGAGAATTAACAGTTGCTTCAGGATTCAGGTTCCACCCTACTGATGAGGAGCTTCTTTACTATTATTTAAGGAGGAAAGTTTCTTATGACGCCATTGACCTTGATGTTATTATAGAAGTTGATCTCAATAGACTTGAGCCTTGGGATCTCAAAGGCAGAAATTGGTATAGTAGAGCTAATTGCTCTTTAGATATCAAAACAGAGAGTCCTAAGCAGATATGGCTGGTAGACTTAAAGACTTCTCCAGATATGGCTGTTACTCTTCTTGAAATTGCTAGAATATTTGCTACTAAAGTTCCAAGAAAGGTTGATGCTGATGTGCTCAACTACTTTGGAAAGTCTGGTTTCTTGGAGAGAATGCAAATTATGCTGCTTCCGAATATGCAAAATATGTTGCTCAGGCTCTTACCACAATGGCAATTAGATCTGGTGAACCTTTTTAGGTTACAGATTTACGAGTTTCTGCACACTTTAGCACAAGGTGGTCTGCAATCACAACTCTCTAATAGTAATATGCATCTTAGCAATGGAGAAGATGAAGGAGCTGGTGCTACAGGTCTTGGAGTTTTATTAAGTCCCATGAAAAAGGTTCTGGATGAGATGTATAGTGCGCAAGATTTATAG 639 0.3897 MMQGSGELTVASGFRFHPTDEELLYYYLRRKVSYDAIDLDVIIEVDLNRLEPWDLKGRNWYSRANCSLDIKTESPKQIWLVDLKTSPDMAVTLLEIARIFATKVPRKVDADVLNYFGKSGFLERMQIMLLPNMQNMLLRLLPQWQLDLVNLFRLQIYEFLHTLAQGGLQSQLSNSNMHLSNGEDEGAGATGLGVLLSPMKKVLDEMYSAQDL 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Trre9g03159 212 SUPERFAMILY NAC domain 6 61 IPR036093 GO:0003677|GO:0006355
Trre9g03159 212 ProSiteProfiles NAC domain profile. 10 143 IPR003441 GO:0003677|GO:0006355
Trre9g03159 212 PANTHER SH3 DOMAIN-CONTAINING PROTEIN 152 211 - -
Trre9g03159 212 Pfam No apical meristem (NAM) protein 12 59 IPR003441 GO:0003677|GO:0006355
Trre9g03159 212 Gene3D NAC domain 19 77 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Trre9g03159 Trre-Chr9 40019879 40021744 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Trre9g03159 2 56 NAC Transcription Factor Family AT1G79580 72.727 1.13e-22 92.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Trre9g03159 NAM 2.1e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Trre9g03159 - - vun:114178728 102.834